PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG010972.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 242aa MW: 27921 Da PI: 5.572 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.4 | 4.1e-30 | 52 | 110 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d +v+++tY+++Hnh+ CCG010972.1 52 SDFWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERCRTDASVLIVTYTSNHNHP 110 699***********************9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.6E-32 | 43 | 112 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.89E-26 | 48 | 112 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-35 | 51 | 111 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.169 | 52 | 112 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.2E-25 | 53 | 110 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MDSSPSRKLD SNVSELTPET QTSKRRKMVE KIVVRVRIGE NARKLKNEGP PSDFWSWRKY 60 GQKPIKGSPY PRGYYRCSTS KGCSAKKQVE RCRTDASVLI VTYTSNHNHP GPDLHDSNVN 120 QQPRDPETPP TDLVDHPITP KQEKPEEETG ERHDHPIMPS TDEDVSEGHN FHYLESPIRI 180 PQDIMISQDY PFTENSEKSH DIVFDEEPIC CSRLMTFSAP KTEENNDFFD ELEELPHIFV 240 FH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 1e-20 | 52 | 112 | 17 | 79 | Disease resistance protein RRS1 |
5w3x_D | 1e-20 | 52 | 112 | 17 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 24 | 45 | RRKMVEKIVVRVRIGENARKLK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ377423 | 0.0 | GQ377423.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011041119.1 | 0.0 | PREDICTED: probable WRKY transcription factor 69 isoform X1 | ||||
TrEMBL | B9I9I2 | 1e-170 | B9I9I2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s11490.1 | 1e-171 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9708 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58710.2 | 6e-36 | WRKY DNA-binding protein 69 |