PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG010929.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

SBP

Protein Properties

Length: 996aa MW: 110412 Da PI: 6.5856

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG010929.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.3	1.7e-41	150	227	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C +dls+ak+yhrrhkvCe+hska+++lv + +qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ CCG010929.1 150 VCQVEDCGVDLSNAKDYHRRHKVCEMHSKASKALVGNAMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 227 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.0E-33	146	212	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.18	148	225	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.03E-39	149	230	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.2E-30	151	224	IPR004333	Transcription factor, SBP-box
CDD	cd00204	2.55E-4	781	880	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 996 aa Download sequence Send to blast
MEARFGGEAH HFYATPPSDM RTVGKRGLEW DLNDWKWDGD LFIASPLNPV PPAGISRQFS 60 SLGAGTGILA TGNSSNSSSS CSDEVNLGAE KGKRELEKRR RVVVIDDDNL NDQETGGLSL 120 KLGGEMDAGN WEGSIGKKTK LAGSGLSRAV CQVEDCGVDL SNAKDYHRRH KVCEMHSKAS 180 KALVGNAMQR FCQQCSRFHV LQEFDEGKRS CRRRLAGHNK RRRKTNPDAV GNGSSMNDDQ 240 TSGYLLISLL KILSNMHSNR SDQTTDQDLL SHLLRSLASH DVEHRGRNIF GQLQEPRDMS 300 TSFGNSAVDS TLLSNGEGPS KPLKQHPTVP MSGMPQQVKH LHDANGANIQ TASSLKPSIP 360 NNFATYSEVR ESTAGQVKMN NFDLNDIYID SDEGTEDIER SPAPVNARTS SLDCPSWVQQ 420 DSHQSSPPQT SRNSDSASAQ SPSSSSGEAQ SRTDRIVFKL FGKEPNDCPF LLRSQILDWL 480 SHSPTDIESY IRPGCIILTI YLRQAEAAWT ELCCDLGSSL SRLLDASDNT FWRTGWVYIR 540 VQHQIAFVYN GQVVVDTSLP LRSNNYSKIL SVKPIAISAS EKVKFFIKGF NLSRPATRLL 600 CAVEGNYMVQ DNAQELMDDV GSFKGHDEFQ CVNLSCSIPT LTGRGFIEIE DHGFSSSFFP 660 FLVAEEDVCS EIRMLESALE FTETDADLGE TEKMEAKNQA MDFIHEMGWL LHRSQLKSRL 720 GHLNPSMDLF PLRRFNWLME FSMDHGWCAV VRKLLNILHD GIVCTGDQLS LNEALSEMGL 780 LHRAVRRNSR YVPDKFGAKD KAMDGGSHES VLFRPDVIGP AGLTPLHIAA GKDGSEDVLD 840 ALTEDPGMVG IVAWKNARDS TGFSPEDYAR LRGHYSYIHL VQKKSKRQVV GHVVLDIPSN 900 LSSSNITNNE KQNEGLTSGF EIGHTELRPI QRNCKLCSQK LVYGTASRSQ LYRPAMFSMV 960 AIAAVCVCVA LLFKSCPEVL YVFRPFRWEL LDYGTS

Sequence ? help Back to Top

Protein Sequence Length: 996 aa Download sequence Send to blast

MEARFGGEAH HFYATPPSDM RTVGKRGLEW DLNDWKWDGD LFIASPLNPV PPAGISRQFS  60
SLGAGTGILA TGNSSNSSSS CSDEVNLGAE KGKRELEKRR RVVVIDDDNL NDQETGGLSL  120
KLGGEMDAGN WEGSIGKKTK LAGSGLSRAV CQVEDCGVDL SNAKDYHRRH KVCEMHSKAS  180
KALVGNAMQR FCQQCSRFHV LQEFDEGKRS CRRRLAGHNK RRRKTNPDAV GNGSSMNDDQ  240
TSGYLLISLL KILSNMHSNR SDQTTDQDLL SHLLRSLASH DVEHRGRNIF GQLQEPRDMS  300
TSFGNSAVDS TLLSNGEGPS KPLKQHPTVP MSGMPQQVKH LHDANGANIQ TASSLKPSIP  360
NNFATYSEVR ESTAGQVKMN NFDLNDIYID SDEGTEDIER SPAPVNARTS SLDCPSWVQQ  420
DSHQSSPPQT SRNSDSASAQ SPSSSSGEAQ SRTDRIVFKL FGKEPNDCPF LLRSQILDWL  480
SHSPTDIESY IRPGCIILTI YLRQAEAAWT ELCCDLGSSL SRLLDASDNT FWRTGWVYIR  540
VQHQIAFVYN GQVVVDTSLP LRSNNYSKIL SVKPIAISAS EKVKFFIKGF NLSRPATRLL  600
CAVEGNYMVQ DNAQELMDDV GSFKGHDEFQ CVNLSCSIPT LTGRGFIEIE DHGFSSSFFP  660
FLVAEEDVCS EIRMLESALE FTETDADLGE TEKMEAKNQA MDFIHEMGWL LHRSQLKSRL  720
GHLNPSMDLF PLRRFNWLME FSMDHGWCAV VRKLLNILHD GIVCTGDQLS LNEALSEMGL  780
LHRAVRRNSR YVPDKFGAKD KAMDGGSHES VLFRPDVIGP AGLTPLHIAA GKDGSEDVLD  840
ALTEDPGMVG IVAWKNARDS TGFSPEDYAR LRGHYSYIHL VQKKSKRQVV GHVVLDIPSN  900
LSSSNITNNE KQNEGLTSGF EIGHTELRPI QRNCKLCSQK LVYGTASRSQ LYRPAMFSMV  960
AIAAVCVCVA LLFKSCPEVL YVFRPFRWEL LDYGTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	8e-30	144	224	6	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	101	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269\|PubMed:16554053}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU231172	0.0	CU231172.1 Populus EST from mild drought-stressed leaves.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011040504.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
Swissprot	Q9S7P5	0.0	SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBL	A0A2I4KKA7	0.0	A0A2I4KKA7_POPTR; SBP family protein
STRING	POPTR_0014s10960.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	squamosa promoter-binding protein-like 12

Publications ? help Back to Top
Jung S, et al. Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. BMC Genomics, 2006. 7: p. 81 [PMID:16615871] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]