PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010914.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 505aa    MW: 54406.9 Da    PI: 6.9926
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010914.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.4e-31269327259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  CCG010914.1 269 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDKTILITTYEGNHNHP 327
                  7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-33253329IPR003657WRKY domain
SuperFamilySSF1182901.01E-27261329IPR003657WRKY domain
PROSITE profilePS5081129.976263329IPR003657WRKY domain
SMARTSM007747.7E-37268328IPR003657WRKY domain
PfamPF031061.3E-26270327IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MDKQGRELVF FHSGDFLRQN PGVSDHSNDS SSDHTRPIIK EVDFFSTDRT SEFPGTDQEK  60
KISTIGSSSL VDSSINTGLN LLTSSSGISI IANVKNPDND ELSGLQGELE RLHDENKKLR  120
SLLDQITKSY KDLQAQLIMA TQKQTQGNRI EQKRELNDTP GSIMSAQHLV DPRPRPSVTL  180
DVNDPSVSDD KTQEVLVSST NTVGTKSQML GKRASIEDGL DQTSQSWGSP KSPKLEHEKP  240
DEPDEQIPEV PFRKARVSVR ARSDAPLISD GCQWRKYGQK MAKGNPCPRA YYRCTMAVGC  300
PVRKQVQRCA EDKTILITTY EGNHNHPLPP AATAMASTTS AAAAMLLSGS TTSKEGLSSS  360
SSFYPSFPYA STMATLSASA PFPTITLDLT QGPNTTMPFH RTSPSPATFP LPLHGFPQLL  420
GHPLYASPKL PAIPSVQLGQ RHASMVETVT AAIASDPNFT AALAAAISTF MGTPRGSDGA  480
TNHNAPSGIP GSPQLPQSCT TFSTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-21255331176WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1485770.0EF148577.1 Populus trichocarpa x Populus deltoides clone WS0134_F08 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011040119.10.0PREDICTED: probable WRKY transcription factor 47
TrEMBLA9PJI80.0A9PJI8_9ROSI; Uncharacterized protein
STRINGPOPTR_0014s10750.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104392541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.14e-95WRKY family protein