PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010909.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 551aa    MW: 60257.5 Da    PI: 6.5669
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010909.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH482.2e-15377422555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  Er+RRd+iN+++  L++l+P++      K++Ka++L +A++Y+ksLq
  CCG010909.1 377 HNLSERKRRDKINKKMRALQDLIPNS-----NKVDKASMLGEAIDYLKSLQ 422
                  9************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.86E-17368426No hitNo description
SuperFamilySSF474596.02E-20369435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-19369431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.854372421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-12377422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-18378427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0010017Biological Processred or far-red light signaling pathway
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MELVWENGQV LMRVLSTSSS CTSYTPHPIK NVSEVENNSD GYSTKRPRLG TGDSILGDFP  60
LIDDRELAKR DSKPSQDDHQ PELFSELCET NLNMLLENNE NNIYEKNITD GAHVVPGYND  120
ANWRPGNASE VAAEVPQLTT ASNGQLYQSF LEQHKASAPL FHGLPNSKLQ QVDSGSDNHS  180
RLQNLSHILR PALPNPNQGS NATRGPASSR LQQLKSNTDE PPAGRRNLES GQMVPTYASK  240
VSKYFHDQQY LLESQIVPIG PIDRSAEASP PDEQSEAVLH NYATTTKRCC DRVFGSTSGS  300
AEKTIKGKPD RGKSIDQLTA TTSICSRGAS NDPTSSLERQ YEDTEGTAYT SDDLEEEEQV  360
PARGSAGSKR RRATEIHNLS ERKRRDKINK KMRALQDLIP NSNKVDKASM LGEAIDYLKS  420
LQLQVQMMSM GTRLCMPLMM LPTGMQHIHS PLLAQFSPMG VGMDTRLMQM GVGCSPATFP  480
ASGMFGLPAG QMLPMSVSQA PFFPLNIGGH STHSSVPMPA LSGVVSTPLE FLRSAVFPSS  540
KDIIHSNTSA R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1369384RRRATEIHNLSERKRR
2380385ERKRRD
3381386RKRRDK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1470630.0EF147063.1 Populus trichocarpa clone WS01226_P13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011040055.10.0PREDICTED: transcription factor PIF3-like
TrEMBLB9I9990.0B9I999_POPTR; Uncharacterized protein
STRINGPOPTR_0014s10700.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133291829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46970.11e-34phytochrome interacting factor 3-like 1