PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010883.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 323aa    MW: 36157.9 Da    PI: 6.2427
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010883.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM127.41.2e-39141423128
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  +G+rFhPt+eelv++yLk+k+ g+++e  ++++ v+++k+eP++Lp k ++k+++  wyfF++rd ky ++ r nr tk g+Wk tgk  ++  + ++
  CCG010883.2  14 VGYRFHPTNEELVCNYLKPKILGDDVEDLSIMPVVHVCKHEPSELPdKsNIKSKDAVWYFFCPRDFKYLNSGRYNRRTKLGFWKPTGKILKIRFTgTK 111
                  7************************999999**************96347888889********************************9999887577 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  +++g++ktLvfy++  pk+ +t W+mhey+ 
  CCG010883.2 112 KVIGTRKTLVFYTKACPKPIRTGWIMHEYEY 142
                  88***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100542.55212162IPR003441NAC domain
SuperFamilySSF1019411.16E-4313162IPR003441NAC domain
PfamPF023657.7E-2514141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MNSSTNPNPS IPEVGYRFHP TNEELVCNYL KPKILGDDVE DLSIMPVVHV CKHEPSELPD  60
KSNIKSKDAV WYFFCPRDFK YLNSGRYNRR TKLGFWKPTG KILKIRFTGT KKVIGTRKTL  120
VFYTKACPKP IRTGWIMHEY EYSSDLSPCN QGGYVLCKLK KKPEVRTNKS EPNHHMVSIS  180
DFEAAPNCSI EGECGPTREM PSKFMNHSTH GYGDSSLLDL DSENPNLDIS APDEGERNSL  240
TVLPSGLENG NPWEKTEEGC LLSSVVSPEN SPPDAWLPDF SLLAKLKALI SELENNLPSF  300
QPAASVSTEE IPFHMGFDAP VST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-261516220165NO APICAL MERISTEM PROTEIN
1ut4_B2e-261516220165NO APICAL MERISTEM PROTEIN
1ut7_A2e-261516220165NO APICAL MERISTEM PROTEIN
1ut7_B2e-261516220165NO APICAL MERISTEM PROTEIN
4dul_A2e-261516220165NAC domain-containing protein 19
4dul_B2e-261516220165NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011039650.10.0PREDICTED: NAC domain-containing protein 45-like isoform X2
TrEMBLA0A2K1XTR70.0A0A2K1XTR7_POPTR; Uncharacterized protein
STRINGPOPTR_0014s10370.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1616767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.11e-42NAC domain containing protein 96