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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG010882.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 333aa MW: 38470.2 Da PI: 7.7611 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 143.1 | 1.6e-44 | 7 | 136 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 p+G+ FhP+deelv++yL+ k++g ++ + i+e++++++ePw Lp+ ++++ ++ e+yfF++r+ kya+++r+nr+t++gyWk tgkd+ v++k CCG010882.1 7 PVGYGFHPNDEELVTYYLRLKMHGGYEQEVRLIAEANVCDYEPWVLPElsAIQEpNDPECYFFCPRSYKYANSHRANRTTQAGYWKVTGKDRIVKTKt 104 79***********************9888899**************953444443555************************************9987 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyr 127 ++e++g+kktLvfy+gr p+g kt+W+mhey+ CCG010882.1 105 TKEHIGTKKTLVFYTGRVPNGIKTNWIMHEYH 136 7888***************************8 PP | |||||||
2 | NAM | 93.3 | 4e-29 | 169 | 248 | 50 | 127 |
NAM 50 kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 ++k+ ++ e+yfF++r+ ky++++r+nr+t++gyWk tgkd++v++k ++e++ +kktLvfy+gr p+g kt+Wvmhey+ CCG010882.1 169 AIKEpNDPECYFFCPRSYKYPNSHRANRTTQAGYWKVTGKDRAVKAKtTKEHIATKKTLVFYEGRVPNGIKTNWVMHEYH 248 33333566*************************************9977888***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.59E-49 | 5 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.72 | 6 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-25 | 7 | 136 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.7E-15 | 142 | 248 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 24.674 | 155 | 267 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.09E-31 | 171 | 266 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MNSRPPPVGY GFHPNDEELV TYYLRLKMHG GYEQEVRLIA EANVCDYEPW VLPELSAIQE 60 PNDPECYFFC PRSYKYANSH RANRTTQAGY WKVTGKDRIV KTKTTKEHIG TKKTLVFYTG 120 RVPNGIKTNW IMHEYHPTFS FPNQREFVLC KLKKDPDAMM PTYKEELSAI KEPNDPECYF 180 FCPRSYKYPN SHRANRTTQA GYWKVTGKDR AVKAKTTKEH IATKKTLVFY EGRVPNGIKT 240 NWVMHEYHPT FTFNNQREFV LCKLKKDPDA IMPTYEEGEA SFNVTSDHTE NQNSTEYNHP 300 QAFQEGEDGA WTASNFTNNE PEVSSSAACI GCG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-35 | 7 | 266 | 18 | 164 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-35 | 7 | 266 | 18 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-35 | 7 | 266 | 18 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-35 | 7 | 266 | 18 | 164 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-35 | 7 | 266 | 21 | 167 | NAC domain-containing protein 19 |
3swm_B | 2e-35 | 7 | 266 | 21 | 167 | NAC domain-containing protein 19 |
3swm_C | 2e-35 | 7 | 266 | 21 | 167 | NAC domain-containing protein 19 |
3swm_D | 2e-35 | 7 | 266 | 21 | 167 | NAC domain-containing protein 19 |
3swp_A | 2e-35 | 7 | 266 | 21 | 167 | NAC domain-containing protein 19 |
3swp_B | 2e-35 | 7 | 266 | 21 | 167 | NAC domain-containing protein 19 |
3swp_C | 2e-35 | 7 | 266 | 21 | 167 | NAC domain-containing protein 19 |
3swp_D | 2e-35 | 7 | 266 | 21 | 167 | NAC domain-containing protein 19 |
4dul_A | 2e-35 | 7 | 266 | 18 | 164 | NAC domain-containing protein 19 |
4dul_B | 2e-35 | 7 | 266 | 18 | 164 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024440064.1 | 1e-113 | protein NTM1-like 9 isoform X5 | ||||
Swissprot | F4JN35 | 3e-52 | NTL9_ARATH; Protein NTM1-like 9 | ||||
TrEMBL | A0A3N7G157 | 1e-111 | A0A3N7G157_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s10350.1 | 1e-113 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2065 | 25 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 1e-54 | NAC transcription factor-like 9 |
Publications ? help Back to Top | |||
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