PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010881.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 408aa    MW: 45873.5 Da    PI: 6.57
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010881.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM126.32.6e-3931322128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                  p+G+rFhPtdee++++yL++k++g +  ++  i e+ ++y+++PwdLp     +++++ w+fF++ d ky+++kr nr+tk+g Wk tgk ++++++ 
  CCG010881.1   3 PVGYRFHPTDEEIIDHYLRNKLNGLDSLVDAYIGEIdHLYQWDPWDLPdFaVSQSNDRVWFFFCRLDYKYSNSKRVNRTTKNGNWKLTGKVRNIKRRg 100
                  89************************888777****669*********6435566788**************************************97 PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  ++e++g+kk Lvf   + p+++kt+Wv+he+++
  CCG010881.1 101 TNEVIGTKKNLVFL-HKCPDSKKTRWVIHEFQA 132
                  7788*********9.788999**********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100543.4532150IPR003441NAC domain
SuperFamilySSF1019412.09E-413149IPR003441NAC domain
PfamPF023654.0E-223131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MKPVGYRFHP TDEEIIDHYL RNKLNGLDSL VDAYIGEIDH LYQWDPWDLP DFAVSQSNDR  60
VWFFFCRLDY KYSNSKRVNR TTKNGNWKLT GKVRNIKRRG TNEVIGTKKN LVFLHKCPDS  120
KKTRWVIHEF QAKTSPPVER ALVLCKLKEK ADDSAANSPN DEGEPSILEV DAEQLPSLLD  180
SLGEDFNFPS PLQSQIYAQN YLSDEEDAIG FAFADSLIVD PDEYGTENAA LSLPNDHSSP  240
RSSRKAYAED SSDRTTYHAY GESANLYGGH GNLKISRQLQ MAHGDDILLM GASSTDSTTA  300
TRHEHIKLMQ SGGEVIPRTR QPPPPVAPSF VERKEVSHKR VQLLRGVSKA GEGRNESADI  360
DLPRKGRFIH LETTISSHGS SPLSVYLLNA VLGLLLFLIM LREALIVH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-26313116139Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011039628.10.0PREDICTED: NAC domain-containing protein 4-like
TrEMBLA0A3N7FYL30.0A0A3N7FYL3_POPTR; Uncharacterized protein
STRINGPOPTR_0014s10320.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14584713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.13e-39NAC domain containing protein 62