PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010847.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 493aa    MW: 54958.9 Da    PI: 5.9328
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010847.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.5e-12317362454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI+++
  CCG010847.1 317 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEM 362
                  799***********************6.....4***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.6E-5325208IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.577313362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-17314377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.49E-13316366No hitNo description
Gene3DG3DSA:4.10.280.101.9E-16317378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9317362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-15319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MEGLIISPSS SSSLVSLSHE TPPTLQQRLQ FIVQSQPDRW SYAIFWQASQ DDSGQIFLAW  60
GDGHFQGSKD TSPKLSTTNN SRMSTSNSER KRVMKGIHSL LDECHDLDMS LMDGTDSTDI  120
EWFYVMSLTR SFSPGDGILG KAYTTGSLIW LTGGHELQFY NCERVKEAQM HGIETLICIP  180
TSCGVLELGS SCVIRENWGI VQQVRSLFVS DLNPCLVPKG PNNPCQEPIQ FLDRNISLAE  240
GAIIAGLQED DNTIEHGEKR TQERAETKKD NVNKLGQSYV DSEHSDSDFH FVAVNIEKRI  300
PKKRGRKPGL GRGAPLNHVE AERQRREKLN HRFYALRAVV PNVSRMDKAS LLSDAVSYIN  360
EMKAKVDKLE SQLQRESKKV KMEVADTMDN QSTTTSVDQA ACRPNSNSGG AGLALEVEVK  420
FVGNDAMIRV QSDNVNYPAS RLMSALRDLE FQVHHASMSS VNELMLQDVV VRVPDGLRTE  480
EELKSALLGR LEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-35242088192Transcription factor MYC3
4rqw_B2e-35242088192Transcription factor MYC3
4rs9_A2e-35242088192Transcription factor MYC3
4yz6_A2e-35242088192Transcription factor MYC3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011039030.10.0PREDICTED: transcription factor MYC2 isoform X2
TrEMBLA0A2I4KK780.0A0A2I4KK78_POPTR; BHLH family protein
STRINGPOPTR_0002s17750.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.13e-75bHLH family protein