PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010809.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 198aa    MW: 21893.3 Da    PI: 4.7033
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010809.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.7e-193888155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++aa+ +l+g
  CCG010809.1 38 PVYRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDAAAYCLKG 88
                 68*****887.**********843...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.5E-133888IPR001471AP2/ERF domain
PROSITE profilePS5103222.8933996IPR001471AP2/ERF domain
SMARTSM003801.7E-3339102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-303997IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-213998IPR016177DNA-binding domain
CDDcd000182.48E-204097No hitNo description
PRINTSPR003673.2E-124051IPR001471AP2/ERF domain
PRINTSPR003673.2E-127898IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MEQPPYTEDE PTTNSPEAAT AKTHQNSETP RGSGTRNPVY RGVRKRRWGK WVSEIREPRK  60
KSRIWLGSFP VPEMAAKAYD AAAYCLKGCK AQLNFPDEVD DLPRPSTCTA RDIQAAAAKA  120
AHSVLLPSKK SIETNSEDSV DGEVVDDDFW GEIELPELLT SNSGCCWNSC GWSTPFASDG  180
STWQQDGEAL PQFMACLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1831100676Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559330.0EF155933.1 Populus trichocarpa TINY-like protein (TINYL14) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038335.11e-147PREDICTED: ethylene-responsive transcription factor ERF023-like
SwissprotQ1ECI22e-62ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA9PL831e-134A9PL83_POPTR; TINY-like protein
STRINGPOPTR_0014s09540.11e-135(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63752847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.17e-52ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]