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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG010809.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 198aa MW: 21893.3 Da PI: 4.7033 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.7e-19 | 38 | 88 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ + r++lg+f +e+Aaka++aa+ +l+g CCG010809.1 38 PVYRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDAAAYCLKG 88 68*****887.**********843...6************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.5E-13 | 38 | 88 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.893 | 39 | 96 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-33 | 39 | 102 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-30 | 39 | 97 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-21 | 39 | 98 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.48E-20 | 40 | 97 | No hit | No description |
PRINTS | PR00367 | 3.2E-12 | 40 | 51 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-12 | 78 | 98 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MEQPPYTEDE PTTNSPEAAT AKTHQNSETP RGSGTRNPVY RGVRKRRWGK WVSEIREPRK 60 KSRIWLGSFP VPEMAAKAYD AAAYCLKGCK AQLNFPDEVD DLPRPSTCTA RDIQAAAAKA 120 AHSVLLPSKK SIETNSEDSV DGEVVDDDFW GEIELPELLT SNSGCCWNSC GWSTPFASDG 180 STWQQDGEAL PQFMACLY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-18 | 31 | 100 | 6 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF155933 | 0.0 | EF155933.1 Populus trichocarpa TINY-like protein (TINYL14) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011038335.1 | 1e-147 | PREDICTED: ethylene-responsive transcription factor ERF023-like | ||||
Swissprot | Q1ECI2 | 2e-62 | ERF23_ARATH; Ethylene-responsive transcription factor ERF023 | ||||
TrEMBL | A9PL83 | 1e-134 | A9PL83_POPTR; TINY-like protein | ||||
STRING | POPTR_0014s09540.1 | 1e-135 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6375 | 28 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01250.1 | 7e-52 | ERF family protein |
Publications ? help Back to Top | |||
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