PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010728.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 348aa    MW: 38289.8 Da    PI: 6.1807
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010728.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.41.9e-30163221259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp ++++tY+ eHnh+
  CCG010728.1 163 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNRSDPGMFIVTYTAEHNHP 221
                  79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-30153223IPR003657WRKY domain
PROSITE profilePS5081135.049157223IPR003657WRKY domain
SuperFamilySSF1182904.45E-26160223IPR003657WRKY domain
SMARTSM007741.0E-36162222IPR003657WRKY domain
PfamPF031062.2E-25164221IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEDIDWDLHA VVRGCTTSTS NPSTTTTTTI NSNSTASGYR SDYYPQYSCF SGFGSEQDGH  60
LFSHPDPFET RNAIGELHEL YKPFFPKSQQ PLYSPQACTP LSSFSSITSF TKEQPQQQQK  120
QPQPKQSHTG SVISSANSHT PRSKRRKNQL KKVCQVPAEA LSSDVWAWRK YGQKPIKGSP  180
YPRGYYRCSS SKGCLARKQV ERNRSDPGMF IVTYTAEHNH PAPTHRNSLA GSTRQKTSTP  240
QTGKANDSSK PSSPAKPACS SPATSLEDEL LAQSTSNTEL SREEKDITED DDEDEIGGFS  300
DIAVSDDFFA GVEEFVGPAT EDYFPDHFPA SFGQPWLANN AATAAESI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-22147224280Disease resistance protein RRS1
5w3x_D3e-22147224280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774430.0GQ377443.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011037096.10.0PREDICTED: WRKY transcription factor 22
TrEMBLU5FPQ50.0U5FPQ5_POPTR; WRKY family protein
STRINGPOPTR_0014s08600.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42053259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-78WRKY family protein