PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010720.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 353aa    MW: 38990.9 Da    PI: 8.4323
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010720.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.7e-1382126147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
      CCG010720.1  82 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 126
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.72E-1776132IPR009057Homeodomain-like
PROSITE profilePS5129415.45277131IPR017930Myb domain
TIGRFAMsTIGR015572.3E-1880129IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.5E-680132IPR009057Homeodomain-like
SMARTSM007176.2E-1181129IPR001005SANT/Myb domain
PfamPF002493.0E-1182126IPR001005SANT/Myb domain
CDDcd001672.36E-884127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MVSVNPNPAP GFYFFDPMNN SSHMELPGVN ILPPTNTNTA TDPCNDTVSA ANINTNNSHK  60
LVSFSEDPNK KIRKPYTITK TRESWTEQEH DKFLEALQLF DRDWKKIEAF VGSKTVIQIR  120
SHAQKYFLKV QKSGTSEHVP PPRPKRKAAH PYPQKAPKSA AVASQVTGSF QSSSALLEPG  180
YLYGPDSTSV LGNPITSGAL STWSFNSVPP VSMSLMTNDD AGLAGPIIAT KCCYSSSNES  240
ASRTWQTGKI IDKRAQGKPE RVMPDFSQVY SFIGSVFDPN ASDHLQRLKQ MDPINLETVL  300
LLMRNLSINL TSPEFEDHRR LLASYDVDSE KANEVGAYRN TTVDRLGNPI PAI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00423DAPTransfer from AT4G01280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011037023.10.0PREDICTED: protein REVEILLE 5 isoform X2
SwissprotC0SVG51e-112RVE5_ARATH; Protein REVEILLE 5
TrEMBLB9I8P30.0B9I8P3_POPTR; Uncharacterized protein
STRINGPOPTR_0014s08520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11193396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.21e-100MYB_related family protein
Publications ? help Back to Top
  1. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]