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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG010616.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 306aa MW: 33415.1 Da PI: 8.3974 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.7 | 3.8e-20 | 28 | 78 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++ GVr+++ +grWvAeI+d s +r r +lg+++t+eeAa+a+++a+++l+ge CCG010616.1 28 RFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAARAYDEAARALRGE 78 589******.7*********43...36**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.534 | 28 | 85 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-28 | 28 | 86 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.03E-32 | 28 | 85 | No hit | No description |
SMART | SM00380 | 5.8E-36 | 28 | 91 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.8E-15 | 28 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-7 | 29 | 40 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-20 | 29 | 85 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.1E-7 | 51 | 67 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MAEPETLRNS PTVTTTKVQA TKGPTVRRFV GVRQRPSGRW VAEIKDSSQR VRLWLGTYDT 60 PEEAARAYDE AARALRGENA RTNFASVNPN LNQYGSSPSS NGGLKMSESD GRHGLSFSSL 120 KAKLSKNLQS IMARTTENKA TKNRVSDHFT FANIFHFRSH QYQNPVDMKS IEKVVQPSII 180 VPHVSDHKPS YSWETSCVSD CSNEWIGFRQ YGFDSDGSDI GEVLSTVNAD QMIGWVESPD 240 INTCCGDPCS RSKRLKVSSS VVVPPTFSGS PSFCASPSFS GSPSFCASPS FSGSPSFCGS 300 PFHGEN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-14 | 28 | 84 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011035387.1 | 0.0 | PREDICTED: uncharacterized protein LOC105133206 | ||||
TrEMBL | A0A2C9VT61 | 1e-143 | A0A2C9VT61_MANES; Uncharacterized protein | ||||
STRING | POPTR_0014s07280.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8324 | 31 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 2e-17 | related to AP2 11 |