PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG010610.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 671aa MW: 76910.8 Da PI: 8.431

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG010610.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	139.1	2.8e-43	12	140	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 p+G+ FhPtdeel++++Lk k+ g ++ +i+evd++++ePw+Lp ++++++++ wyfFs+r+ ky++ k+++r+tk+gyWk tg+d+ + + + CCG010610.1 12 PKGYGFHPTDEELINHFLKLKMMGGYDHEVAIIAEVDVCNSEPWELPglSEIQSNDTVWYFFSPRNYKYSNRKQAKRTTKAGYWKLTGNDRIIRAMsT 109 89*******************999888799***********6449999999******************************9998778 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyr 127 ge++ kk+Lvfykgr p+g++t+W+mhey+ CCG010610.1 110 GEEIAKKKSLVFYKGRVPNGVRTNWIMHEYN 140 999*************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-49	4	158	IPR003441	NAC domain
PROSITE profile	PS51005	49.628	11	159	IPR003441	NAC domain
Pfam	PF02365	5.8E-22	12	140	IPR003441	NAC domain
Pfam	PF03141	5.5E-211	185	654	IPR004159	Putative S-adenosyl-L-methionine-dependent methyltransferase
SuperFamily	SSF53335	2.93E-24	187	371	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
Gene3D	G3DSA:3.40.50.150	5.0E-11	238	366	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
CDD	cd02440	0.00413	257	351	No hit	No description
SuperFamily	SSF53335	1.59E-9	506	650	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0008168	Molecular Function	methyltransferase activity

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence Send to blast
MTSSTVPFPS APKGYGFHPT DEELINHFLK LKMMGGYDHE VAIIAEVDVC NSEPWELPGL 60 SEIQSNDTVW YFFSPRNYKY SNRKQAKRTT KAGYWKLTGN DRIIRAMSTG EEIAKKKSLV 120 FYKGRVPNGV RTNWIMHEYN PTFNFHNQKD FVLCKLKKNS DDKLTYEEGG SSSNMASDFP 180 NIVTEVPFRW PESREFAWYA NVPHKELTVE KKNQNWVHVE GERLRFPGGG TMFPRGADAY 240 IDDIGQLINL KDGSIRTAID TGCGVASWGA YLLSRNILAV SFAPRDTHVS QVQFALERGV 300 PALIGIIASI RLPYPSRSFD MAHCSRCLIP WGQYDGQYLI EVDRILRPGG YWILSGPPIN 360 WEAHWEGWNR TREDLGAEQS QIEEVARSLC WKKLVQRKDI AIWQKPTNHI HCKVNRKVFK 420 RPLFCKSQNP DMAWYTKMET CLTPLPEVSN IRDIAGGQLA KWPERLNAIP PRISRGSLEG 480 ITAGNFIENS ELWKRRVAYY KKIDYQLAQT GRYRNLLDMN AHLGGFAAAL VDDPVWVMNV 540 VPVQAKTNTL GVIFERGLIG TYQNWCEAMS TYPRTYDFIH ADSVFSLYND RCDMQDILLE 600 MDRILRPEGS VIMRDDVDIL MKVKSIIDVM QWDGRIADHE SSPHRREKIL FATKKYWTAP 660 NPGQNEGLVI S

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence Send to blast

MTSSTVPFPS APKGYGFHPT DEELINHFLK LKMMGGYDHE VAIIAEVDVC NSEPWELPGL  60
SEIQSNDTVW YFFSPRNYKY SNRKQAKRTT KAGYWKLTGN DRIIRAMSTG EEIAKKKSLV  120
FYKGRVPNGV RTNWIMHEYN PTFNFHNQKD FVLCKLKKNS DDKLTYEEGG SSSNMASDFP  180
NIVTEVPFRW PESREFAWYA NVPHKELTVE KKNQNWVHVE GERLRFPGGG TMFPRGADAY  240
IDDIGQLINL KDGSIRTAID TGCGVASWGA YLLSRNILAV SFAPRDTHVS QVQFALERGV  300
PALIGIIASI RLPYPSRSFD MAHCSRCLIP WGQYDGQYLI EVDRILRPGG YWILSGPPIN  360
WEAHWEGWNR TREDLGAEQS QIEEVARSLC WKKLVQRKDI AIWQKPTNHI HCKVNRKVFK  420
RPLFCKSQNP DMAWYTKMET CLTPLPEVSN IRDIAGGQLA KWPERLNAIP PRISRGSLEG  480
ITAGNFIENS ELWKRRVAYY KKIDYQLAQT GRYRNLLDMN AHLGGFAAAL VDDPVWVMNV  540
VPVQAKTNTL GVIFERGLIG TYQNWCEAMS TYPRTYDFIH ADSVFSLYND RCDMQDILLE  600
MDRILRPEGS VIMRDDVDIL MKVKSIIDVM QWDGRIADHE SSPHRREKIL FATKKYWTAP  660
NPGQNEGLVI S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	6e-33	10	159	19	168	NAC domain-containing protein 19
3swm_B	6e-33	10	159	19	168	NAC domain-containing protein 19
3swm_C	6e-33	10	159	19	168	NAC domain-containing protein 19
3swm_D	6e-33	10	159	19	168	NAC domain-containing protein 19
3swp_A	6e-33	10	159	19	168	NAC domain-containing protein 19
3swp_B	6e-33	10	159	19	168	NAC domain-containing protein 19
3swp_C	6e-33	10	159	19	168	NAC domain-containing protein 19
3swp_D	6e-33	10	159	19	168	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011035186.1	0.0	PREDICTED: probable methyltransferase PMT15 isoform X3
Swissprot	Q9ZPH9	0.0	PMTF_ARATH; Probable methyltransferase PMT15
TrEMBL	A0A2K1XRY1	0.0	A0A2K1XRY1_POPTR; Uncharacterized protein
STRING	POPTR_0014s07180.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	7e-45	NAC transcription factor-like 9

Publications ? help Back to Top
Narsai R,Law SR,Carrie C,Xu L,Whelan J In-depth temporal transcriptome profiling reveals a crucial developmental switch with roles for RNA processing and organelle metabolism that are essential for germination in Arabidopsis. Plant Physiol., 2011. 157(3): p. 1342-62 [PMID:21908688]