PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010529.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 464aa    MW: 50278.7 Da    PI: 7.95
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010529.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.57.8e-16290335555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  CCG010529.1 290 HNQSERKRRDKINQRMKTLQKLVPSS-----SKTDKASMLDEVIEYLKQLQ 335
                  9************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.587285334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-19288358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-18290345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.05E-17290339No hitNo description
PfamPF000102.0E-13290335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-18291340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MSHQCVPSWE VDDNRTTAPI HSLRFHSNSS APDVPMLDYE VAELTWENGQ IAMHGLGPPR  60
VPSKPIASTS PSKYTWDKPR ASGTLESIVN QATCVPQCNK ATFDNSTGSD HELIPWFNHH  120
KASASATMTM DALVPCSNRS DQGRTTHVID SGPAGLGTCV VGCSTRVGSC SAPAATQDED  180
GLLTGKRARV ARVPVPPEWS RDQSVNHSAA FGKKDSQQMT VDSCEREFGV GFTSTSFGSQ  240
ENTSSGTNPC TKTLTADEND SREAGKEDDK KKGNGKSSVS TKRSRAAAIH NQSERKRRDK  300
INQRMKTLQK LVPSSSKTDK ASMLDEVIEY LKQLQAQVQM MSRMNMQPMM LPLALQQQLQ  360
MSMMAPMSMG MAGMGMGMGV MDMNAIAARS NMTGIPPALH PTAFIPLTTW DGSSGHDRLQ  420
TTAADPLSAF LACQTQPMTM DAYSRMAAMY QQLHQQPPAS NSKG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293298ERKRRD
2294299RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033896.10.0PREDICTED: transcription factor UNE10
SwissprotQ8GZ381e-106UNE10_ARATH; Transcription factor UNE10
TrEMBLB9IBW90.0B9IBW9_POPTR; Uncharacterized protein
STRINGPOPTR_0014s06190.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-93bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]