PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG010362.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 418aa MW: 46305.5 Da PI: 4.6763 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 55.8 | 1.6e-17 | 39 | 150 | 6 | 128 |
NAM 6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglk 103 Fh +deel +L + +g++l+ +vi++v+ y + P++Lp+ +a e ++ r k +n t g+Wk +g+ +++s +++ +g + CCG010362.1 39 DFHCRDEELF-MFLYRLNSGSPLPG-NVITDVNPYIYSPSNLPADEDAY-AEDIWYLLRVK-------ENDDTGLGFWKVKGEACKLFS-NSAITGWR 125 69*******9.99***********9.99***************533332.23344444444.......3456899**************.999***** PP NAM 104 ktLvfykgrapkgektdWvmheyrl 128 +tL f++g+ p+ +ktdW+m+ey + CCG010362.1 126 TTLEFFEGQVPHERKTDWLMQEYWI 150 ***********************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 25.16 | 34 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-8 | 38 | 148 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.35E-24 | 39 | 172 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MLLQAIPGAE RYFDPCAVCF PLDSATMCPP ASSPVADIDF HCRDEELFMF LYRLNSGSPL 60 PGNVITDVNP YIYSPSNLPA DEDAYAEDIW YLLRVKENDD TGLGFWKVKG EACKLFSNSA 120 ITGWRTTLEF FEGQVPHERK TDWLMQEYWI TQKEHSEKRK AKEARSLCRV FLGGEQALDH 180 ENQLIASPHS DTRIDLTQSI GPGTLADTSH GSLSNPEVNK DDETENMVAT GRPPNLPVAN 240 LPEIDCFSRG DYLELLDLDN PASRSSSSDN SSCMTMSSDE YFDSIALLRD LESESNQALA 300 QKDKDCKLSV TASPRPAEVV VLPASQGSYI SIEGGKPHAV ETDSSMHGNG HRDLDIQPAV 360 SNQGANRWGE GPSSNFHAVG ASSGGHVASP DEEEKAARRR RKKSKKKYLC FVPFYFFF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 397 | 405 | RRRRKKSKK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF146675 | 0.0 | EF146675.1 Populus trichocarpa clone WS01211_M01 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011031445.1 | 0.0 | PREDICTED: NAC domain-containing protein 45-like isoform X3 | ||||
TrEMBL | A0A2K1XQ75 | 0.0 | A0A2K1XQ75_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s04080.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10588 | 22 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 2e-17 | NAC domain containing protein 28 |