PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010362.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 418aa    MW: 46305.5 Da    PI: 4.6763
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010362.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM55.81.6e-17391506128
          NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglk 103
                   Fh +deel   +L +  +g++l+  +vi++v+ y + P++Lp+  +a   e  ++  r k       +n  t  g+Wk +g+  +++s +++ +g +
  CCG010362.1  39 DFHCRDEELF-MFLYRLNSGSPLPG-NVITDVNPYIYSPSNLPADEDAY-AEDIWYLLRVK-------ENDDTGLGFWKVKGEACKLFS-NSAITGWR 125
                  69*******9.99***********9.99***************533332.23344444444.......3456899**************.999***** PP

          NAM 104 ktLvfykgrapkgektdWvmheyrl 128
                  +tL f++g+ p+ +ktdW+m+ey +
  CCG010362.1 126 TTLEFFEGQVPHERKTDWLMQEYWI 150
                  ***********************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.1634173IPR003441NAC domain
PfamPF023652.7E-838148IPR003441NAC domain
SuperFamilySSF1019412.35E-2439172IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MLLQAIPGAE RYFDPCAVCF PLDSATMCPP ASSPVADIDF HCRDEELFMF LYRLNSGSPL  60
PGNVITDVNP YIYSPSNLPA DEDAYAEDIW YLLRVKENDD TGLGFWKVKG EACKLFSNSA  120
ITGWRTTLEF FEGQVPHERK TDWLMQEYWI TQKEHSEKRK AKEARSLCRV FLGGEQALDH  180
ENQLIASPHS DTRIDLTQSI GPGTLADTSH GSLSNPEVNK DDETENMVAT GRPPNLPVAN  240
LPEIDCFSRG DYLELLDLDN PASRSSSSDN SSCMTMSSDE YFDSIALLRD LESESNQALA  300
QKDKDCKLSV TASPRPAEVV VLPASQGSYI SIEGGKPHAV ETDSSMHGNG HRDLDIQPAV  360
SNQGANRWGE GPSSNFHAVG ASSGGHVASP DEEEKAARRR RKKSKKKYLC FVPFYFFF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1397405RRRRKKSKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1466750.0EF146675.1 Populus trichocarpa clone WS01211_M01 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031445.10.0PREDICTED: NAC domain-containing protein 45-like isoform X3
TrEMBLA0A2K1XQ750.0A0A2K1XQ75_POPTR; Uncharacterized protein
STRINGPOPTR_0014s04080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105882235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.12e-17NAC domain containing protein 28