PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG010260.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bZIP

Protein Properties

Length: 409aa MW: 44096.4 Da PI: 9.7604

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG010260.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.8	3.2e-15	331	383	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L+ eN++L+k+ e+ ++ + CCG010260.1 331 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKVENEELQKKQAEMMEMQK 383 79***************************************998888777755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.4E-14	327	391	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.116	329	380	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.06E-11	331	381	No hit	No description
CDD	cd14707	3.54E-27	331	385	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.6E-15	331	380	No hit	No description
Pfam	PF00170	3.6E-13	331	383	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	334	349	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MGSNFNFKSF SNDQSDAGVG RPPGNFPLAS QSSIYSLTLE ELQNTMGGSL GKDFGSMNMD 60 ELLKSIWSAE ETQTVASATS AEVQDGVGLQ RQGSLTLPRT LSLKTVDEVW KDMSKEYAIN 120 GTSAGVANNV PQRQPTLGEI TLEEFLARAG VVWEDIPVAA KVNTNGGFFG DLSRLANNSS 180 TIGFQQNSGV GLNNNNTTQI SLQSSNLPLN GNGFRSNQAQ VQQQQQQQQQ IFPKQPNMGY 240 MTQMPPQSSP GIRGGIVGIG DQGINSNLMQ GGGMGVVGLG VATGSPANQL SSDGIGKSNG 300 DTSSVSPVPY VFSGSGRGRR AGGAVEKVVE RRQRRMIKNR ESAARSRARK QAYTMELEAE 360 VAKLKVENEE LQKKQAEMME MQKNQVMEMM TLQQGGKRRC LRRTQTGPW

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MGSNFNFKSF SNDQSDAGVG RPPGNFPLAS QSSIYSLTLE ELQNTMGGSL GKDFGSMNMD  60
ELLKSIWSAE ETQTVASATS AEVQDGVGLQ RQGSLTLPRT LSLKTVDEVW KDMSKEYAIN  120
GTSAGVANNV PQRQPTLGEI TLEEFLARAG VVWEDIPVAA KVNTNGGFFG DLSRLANNSS  180
TIGFQQNSGV GLNNNNTTQI SLQSSNLPLN GNGFRSNQAQ VQQQQQQQQQ IFPKQPNMGY  240
MTQMPPQSSP GIRGGIVGIG DQGINSNLMQ GGGMGVVGLG VATGSPANQL SSDGIGKSNG  300
DTSSVSPVPY VFSGSGRGRR AGGAVEKVVE RRQRRMIKNR ESAARSRARK QAYTMELEAE  360
VAKLKVENEE LQKKQAEMME MQKNQVMEMM TLQQGGKRRC LRRTQTGPW

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ487100	0.0	DQ487100.1 Populus suaveolens abscisic acid responsive element-binding protein 2 (ABF2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011029850.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5
Swissprot	Q9M7Q4	1e-126	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	U5FRA9	0.0	U5FRA9_POPTR; Uncharacterized protein
STRING	POPTR_0014s02810.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1962	34	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	1e-118	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]