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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG010245.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 251aa MW: 27757.5 Da PI: 7.1961 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.9 | 3.8e-13 | 45 | 88 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er RR+++++ f+ L llP++ K +K++i+ +Av+YIk Lq CCG010245.1 45 TERERRKKMRNMFSSLHALLPQL----PAKADKSSIVDEAVKYIKTLQ 88 6*********************6....39******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.42E-11 | 36 | 84 | No hit | No description |
SuperFamily | SSF47459 | 3.01E-16 | 36 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.253 | 37 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-15 | 41 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-10 | 45 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.3E-10 | 45 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 9.16E-6 | 170 | 244 | No hit | No description |
CDD | cd04873 | 1.45E-4 | 175 | 209 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 1.2E-4 | 177 | 247 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MDTEIPAEAV VPGQKRSRKG GDARNKKVVN GGGSGESEHE IHIWTERERR KKMRNMFSSL 60 HALLPQLPAK ADKSSIVDEA VKYIKTLQQT LQTLQKQNVE KFQGAIIDYE PSVITSLTDT 120 VGSREASFAA LGPSKNFPLT SKVSQNSFSV SLSPACFQTW FSPNVVMNMC GDDAQFSLCS 180 TRKPGLLATI LYILEKHNLD VVSAHISSDQ YRSIYMIHVH ADGASDQYPE AMSVEDTFKL 240 AAGEMNLWVM S |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM446591 | 5e-35 | AM446591.2 Vitis vinifera contig VV78X122741.11, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011029593.1 | 0.0 | PREDICTED: transcription factor bHLH95-like | ||||
TrEMBL | B9MVT4 | 1e-172 | B9MVT4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s02600.1 | 1e-173 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4773 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 4e-42 | bHLH family protein |