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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG010243.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 288aa MW: 32480.3 Da PI: 5.4922 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 90.4 | 3.1e-28 | 15 | 151 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.....vikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppG+rF P+de+l ++yLk+k ++ ++++++ ike+d+y++eP dLp+ +ka++++wy ++k++ + ++r++k g+Wk +g CCG010243.1 15 LPPGCRFYPSDEQLFCYYLKNKNRTIPNDTDDvngydLIKELDLYNYEPFDLPEnacyayGYKARKRHWYCYTKEQVRV-----PRRKAKGGFWKISG 107 79********************9999855544455548**************955777765556778999999887765.....678999******** PP NAM 88 kdkevlsk..kgelvglkktLvfykg.rapkgektdWvmheyrl 128 + ++v++ +++++g+++ +vfy g + +++++t Wv+ ey+l CCG010243.1 108 RVRDVVVGpgGEAVMGTRTRFVFYMGnSVKSAVRTGWVLYEYAL 151 ******99878888**********984556788*********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-35 | 11 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 37.421 | 15 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-17 | 16 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MEENNKNPKT LSSSLPPGCR FYPSDEQLFC YYLKNKNRTI PNDTDDVNGY DLIKELDLYN 60 YEPFDLPENA CYAYGYKARK RHWYCYTKEQ VRVPRRKAKG GFWKISGRVR DVVVGPGGEA 120 VMGTRTRFVF YMGNSVKSAV RTGWVLYEYA LVDHAKASFV LCRVFVKSRG GNSISENVVS 180 SCAEESVSAL PSIGAQHDEF LTPDIAEAKG PNDLSRYSAR LDRELDDQVT TRPLSISSFQ 240 FPSDSQCNEA VRRTSGPTGG NMYVDAETSQ QLRSILEGDF IELDDLVD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-20 | 14 | 167 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-20 | 14 | 167 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-20 | 14 | 167 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-20 | 14 | 167 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-20 | 14 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-20 | 14 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-20 | 14 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-20 | 14 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-20 | 14 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-20 | 14 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-20 | 14 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-20 | 14 | 167 | 19 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-20 | 14 | 167 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-20 | 14 | 167 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011029570.1 | 0.0 | PREDICTED: NAC transcription factor 29-like | ||||
TrEMBL | A0A2K1XPG3 | 0.0 | A0A2K1XPG3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s02580.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13001 | 26 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 3e-22 | NAC-like, activated by AP3/PI |