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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
CCG010239.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
WOX |
Protein Properties |
Length: 213aa MW: 24497.6 Da PI: 9.2089 |
Description |
WOX family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
CCG010239.1 | genome | LZU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 65.2 | 8.8e-21 | 78 | 137 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
+R+++t+eq+ +Le l++ r+p+ +++e+++++l +++ ++V++WFqN++a+e++
CCG010239.1 78 TRWNPTQEQIGILEMLYRGgMRTPNGQQIEDITAQLsrygKIEGKNVFYWFQNHKARERQ 137
7*****************99**************************************97 PP
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2 | Wus_type_Homeobox | 117.2 | 7.4e-38 | 78 | 139 | 4 | 65 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
tRW+Pt+eQi iLe+ly+ G+rtPn ++i++ita+L++yGkie+kNVfyWFQN+kaRerqkq
CCG010239.1 78 TRWNPTQEQIGILEMLYRGGMRTPNGQQIEDITAQLSRYGKIEGKNVFYWFQNHKARERQKQ 139
8***********************************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 213 aa
Download sequence Send
to blast |
MGSMKVHQLA RGFWEHEPSL TLSCKRLRPL APKLANTDHS VTSFDLKSFI RPDSGPRKLA 60 SSDEKKDSPQ GETHPGGTRW NPTQEQIGIL EMLYRGGMRT PNGQQIEDIT AQLSRYGKIE 120 GKNVFYWFQN HKARERQKQK RNSLGLSHSP RTPSPITIIS LDTRGEVEKD EDSPYKRKCR 180 SWSFECFELE ESRSCKEEGD RTLELFPLHP EGR
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EF145702 | 0.0 | EF145702.1 Populus trichocarpa clone WS0112_M11 unknown mRNA. |
GenBank | KC691250 | 0.0 | KC691250.1 Populus x canadensis WUSCHEL-related homeobox 4 (WOX4) mRNA, complete cds. |
Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Dolzblasz A, et al.
Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] - Guo X, et al.
Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] - Denis E, et al.
WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] - Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O
WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] - Yamaguchi YL, et al.
Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]
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