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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG010238.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 155aa MW: 17379.4 Da PI: 9.4296 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.5 | 6.8e-18 | 35 | 84 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g CCG010238.1 35 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPIAAARAYDTAVFYLRG 84 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.194 | 35 | 92 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.6E-37 | 35 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-21 | 35 | 93 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.9E-12 | 36 | 47 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.25E-27 | 36 | 94 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.3E-30 | 36 | 93 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-11 | 36 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-12 | 74 | 94 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001078 | Molecular Function | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MEGGCCTSST STPSSTSTAT TEKRKHSRQQ NQEKPYRGIR MRKWGKWVAE IREPNKRSRI 60 WLGSYSTPIA AARAYDTAVF YLRGPSARLN FPDLIYQEDE LRDVSAASIR KKATEVGAKV 120 DALQTAVHAS PEDNSRGLLS EKPDLNKFPE NSDEE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-15 | 34 | 92 | 4 | 63 | ATERF1 |
3gcc_A | 2e-15 | 34 | 92 | 4 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00188 | DAP | Transfer from AT1G46768 | Download |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF155948 | 0.0 | EF155948.1 Populus trichocarpa RAP2.4-like protein (RAP2L7) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011029523.1 | 1e-113 | PREDICTED: ethylene-responsive transcription factor RAP2-1-like | ||||
Swissprot | Q8LC30 | 7e-51 | RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1 | ||||
TrEMBL | A9PL97 | 1e-110 | A9PL97_POPTR; ERF family protein | ||||
STRING | POPTR_0014s02530.1 | 1e-111 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1290 | 32 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46768.1 | 1e-52 | related to AP2 1 |
Publications ? help Back to Top | |||
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