PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG010177.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

DBB

Protein Properties

Length: 195aa MW: 21679.8 Da PI: 6.8238

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG010177.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.7	1.8e-06	4	33	5	34
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++ fC ++ lC C ++ H CCG010177.1 4 LCDACESAFAIVFCAADEAALCLACDEKVH 33 7**************************998 PP
2	zf-B_box	32.9	1.3e-10	52	92	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 e + C+ +e+ ++ ++Ce++++ lC +C ++ H g H+ CCG010177.1 52 EVPPCDICENAPAFFYCETDGSSLCLQCDMTVHVGgkrtHR 92 6789*****************************66666786 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.911	1	47	IPR000315	B-box-type zinc finger
SMART	SM00336	2.1E-6	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	5.08E-5	3	45	No hit	No description
SuperFamily	SSF57845	2.98E-5	48	88	No hit	No description
SMART	SM00336	1.6E-12	51	96	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.499	51	96	IPR000315	B-box-type zinc finger
Pfam	PF00643	2.4E-8	52	92	IPR000315	B-box-type zinc finger
CDD	cd00021	5.50E-8	54	93	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MRTLCDACES AFAIVFCAAD EAALCLACDE KVHMCNKLAS RHVRVGLANP SEVPPCDICE 60 NAPAFFYCET DGSSLCLQCD MTVHVGGKRT HRRYLLLRQK IEFPGDQPQP EDPAPQPMYP 120 GETRRGQNRP QKATAGENRQ NLQVSPVLMS VTNSDGHDKV DKKMIDLNMK PHRIHEYASN 180 NQVIVFSSSL CLNCI

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269\|PubMed:18540109}.
UniProt	Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). Acts as a negative regulator of blue light-mediated inhibition of hypocotyl elongation through increase of bioactive gibberellin levels (PubMed:20872270). Acts as a repressor of thermotolerance by modulating expression of a set of heat shock-responsive genes (PubMed:23238922). {ECO:0000269\|PubMed:18540109, ECO:0000269\|PubMed:20872270, ECO:0000269\|PubMed:23238922}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By blue light (PubMed:20872270) and heat shock (at protein level) (PubMed:23238922). {ECO:0000269\|PubMed:20872270, ECO:0000269\|PubMed:23238922}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF146597	0.0	EF146597.1 Populus trichocarpa clone WS01210_C06 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011028754.1	1e-145	PREDICTED: B-box zinc finger protein 18-like isoform X1
Swissprot	C0SVM5	6e-73	BBX19_ARATH; B-box zinc finger protein 19
Swissprot	Q9SJU5	4e-73	BBX18_ARATH; B-box zinc finger protein 18
TrEMBL	U5GHK5	1e-127	U5GHK5_POPTR; Uncharacterized protein
STRING	POPTR_0005s11900.1	1e-128	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2734	33	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38960.1	4e-61	DBB family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang X,Lin R Light signaling differentially regulates the expression of group IV of the B-box zinc finger family. Plant Signal Behav, 2017. 12(9): p. e1365213 [PMID:28922622]