 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
CCG010168.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 229aa MW: 26640.4 Da PI: 10.0364 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| CCG010168.1 | genome | LZU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 89.7 | 1.5e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ien +nrqvt+skRrngi+KKA+EL vLCda+v++i+fs+t+k++ey+s
CCG010168.1 9 KKIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTNKFHEYIS 59
68***********************************************86 PP
|
| 2 | K-box | 87.2 | 3.2e-29 | 71 | 169 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98
yqk+ g +l+++++e++q++l+kLk+ +++L++e+R+++GedL++Ls+ +L+ Le+++ ++l+ +R +K++++++q+e+ +kk ++l+e++ +L +++
CCG010168.1 71 YQKALGIDLWSTQYEKMQEQLRKLKDINHKLKKEIRQRIGEDLNELSIDHLRVLEHNMTEALNGVRGRKYHVIKTQTETYKKKVRSLEERHGNLWMEY 168
78899999**************************************************************************************9987 PP
K-box 99 e 99
e
CCG010168.1 169 E 169
6 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 31.931 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 1.3E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 3.37E-40 | 2 | 80 | No hit | No description |
| SuperFamily | SSF55455 | 1.31E-37 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.2E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 5.5E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.2E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.2E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 1.5E-19 | 82 | 164 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 14.77 | 84 | 174 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010093 | Biological Process | specification of floral organ identity |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 229 aa
Download sequence Send
to blast |
MGRGKIEIKK IENPTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMFSN TNKFHEYISP 60
STTTKKIYDQ YQKALGIDLW STQYEKMQEQ LRKLKDINHK LKKEIRQRIG EDLNELSIDH 120
LRVLEHNMTE ALNGVRGRKY HVIKTQTETY KKKVRSLEER HGNLWMEYEA KMEDPRFGLV 180
DSEGGYESAA ALVNGASNLY AFRLHQGHHH HHPNLHLAGG LGPHDLRLP
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY359606 | 3e-79 | AY359606.1 Populus tomentosa sex female APETALA3 (AP3) gene, complete cds. |
