PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010166.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family SRS
Protein Properties Length: 354aa    MW: 38079.1 Da    PI: 7.5443
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010166.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702219.29.1e-681172674154
       DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstklssaesk 97 
                  g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpa+krrerq+ql+  ++++++++    + +++kr+re+   + s+l++t+l+++   
  CCG010166.1 117 GSISCQDCGNQAKKDCVHMRCRTCCKSRGFECQTHVKSTWVPASKRRERQHQLTIFQQQQQQQQqlqiRGENPKRQREN--PSPSSLACTHLANN--M 210
                  789**************************************************99988888777444444444444443..56677777776665..5 PP

       DUF702  98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                  + le  s+P+evss+a+fr vrvs++d++ee laYqtav+igGhvfkGiLyd+G+e+
  CCG010166.1 211 SGLELGSFPAEVSSPALFRGVRVSGIDESEEMLAYQTAVNIGGHVFKGILYDHGPES 267
                  679999*************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.6E-66118266IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016237.8E-28120162IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.7E-23218265IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MAGLFSLGRD RSSSGNNQEQ QQNNNNPPTE IPQENWFCYR SEDNSYKGFE LWQQHHHHQE  60
LLHQRHQNPQ QDLYSSAVGL GVGPSRASIN ISDESSSRSA AAAAFMMMRP VGSGVGGSIS  120
CQDCGNQAKK DCVHMRCRTC CKSRGFECQT HVKSTWVPAS KRRERQHQLT IFQQQQQQQQ  180
QLQIRGENPK RQRENPSPSS LACTHLANNM SGLELGSFPA EVSSPALFRG VRVSGIDESE  240
EMLAYQTAVN IGGHVFKGIL YDHGPESNYL APGETSSGGG GGGVQPLNLI AAGTATTSAT  300
ISATATTSAT ISATGGGGVT VASTTASFLD PSSLYPAPLN TFMAGTQFFP NPRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754413e-37HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755143e-37HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
GenBankKC3319103e-37KC331910.1 Solanum lycopersicum expression of terpenoids 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028610.10.0PREDICTED: protein SHI RELATED SEQUENCE 1-like
SwissprotQ9SD401e-100SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBLB9MXK11e-174B9MXK1_POPTR; Uncharacterized protein
STRINGPOPTR_0005s12020.11e-174(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.14e-76Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]