PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG010048.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 298aa MW: 33567 Da PI: 8.8158 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.6 | 7.4e-34 | 59 | 199 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee....vikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....tk..sgyWk 84 lp+G++F+Ptd el+ e+L+ kv++++++++ +i+++d i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+ t+ + +W+ CCG010048.1 59 LPAGVKFDPTDLELL-EHLEGKVKSDTCKVHPlideFIPTIDgengICYTHPEKLP-GVSKDGLIRHFFHRPSKAYTTGTRKRRKvhtdTEggETRWH 154 799************.99*********5553333443444434445**********.555555677******************745553344667** PP NAM 85 atgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +tgk+++v++ g++ g kk+Lv+y g+++k+ekt+Wvmh+y+l CCG010048.1 155 KTGKTRPVVV-AGKVRGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 199 **********.999***********6657999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.28E-38 | 52 | 218 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.37 | 59 | 218 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-15 | 60 | 199 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MTWCNDCNDV QTIERSSPPP CNASVFAQRH KECLIRSCPS CGHQMKCQDQ ARIHDLPGLP 60 AGVKFDPTDL ELLEHLEGKV KSDTCKVHPL IDEFIPTIDG ENGICYTHPE KLPGVSKDGL 120 IRHFFHRPSK AYTTGTRKRR KVHTDTEGGE TRWHKTGKTR PVVVAGKVRG YKKILVLYTN 180 YGKQRKPEKT NWVMHQYHLG NNEEEKDGEL VVSKVFYQTQ PRQCGSLIKD SVPVPSKLKV 240 QSSGHEGSNL KNSTPLVDYY NPSFISFDQS GQNRSTNPNP PQQLLPHFAL QDGSSLIP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB970793 | 0.0 | AB970793.1 Populus nigra PniNAC122 mRNA for NAC transcriptional factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011047705.1 | 0.0 | PREDICTED: NAC domain-containing protein 8-like | ||||
Swissprot | O49459 | 1e-128 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | B9MYC7 | 0.0 | B9MYC7_POPTR; NAC family protein | ||||
STRING | POPTR_0017s04800.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1228 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-130 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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