![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG010029.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 211aa MW: 23069.8 Da PI: 9.7838 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.1 | 1.2e-19 | 27 | 77 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrdp gk+ r++lg+f+ta eAa+a+++a+++++g+ CCG010029.2 27 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAVEAARAYDKAAREYRGA 77 69*******.**********8...557**************************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.19E-22 | 27 | 85 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.64E-29 | 27 | 84 | No hit | No description |
SMART | SM00380 | 1.1E-34 | 27 | 90 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.1E-32 | 27 | 85 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.1E-13 | 27 | 76 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.169 | 27 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 211 aa Download sequence Send to blast |
MAPKKLNGND NGSLKKASGD HDKKEIHYRG VRKRPWGRYA AEIRDPGKKS RVWLGTFDTA 60 VEAARAYDKA AREYRGAKAK TNFPLAEKVV DYEDEKQSSS QSSTVESSSS PVVSAVARDV 120 TRQVGGVVGM GMGRFPFVFQ QQQPNVNAVG PVWFLDSVKP EFGAQRFPVR FDPVGLESGA 180 HSDSDSSSVI DFKPRSSILD LDLNLPPPAD A |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-21 | 27 | 85 | 5 | 64 | ATERF1 |
3gcc_A | 1e-21 | 27 | 85 | 5 | 64 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00542 | DAP | Transfer from AT5G44210 | Download |
![]() |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011047675.1 | 1e-153 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A0A3N7FDB1 | 1e-118 | A0A3N7FDB1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s01110.1 | 1e-119 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G44210.1 | 9e-39 | erf domain protein 9 |