PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG009675.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bZIP

Protein Properties

Length: 500aa MW: 55559.5 Da PI: 7.7217

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG009675.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	23.2	1.5e-07	194	237	4	45
XCHHHCHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKka..eieeLeekvkeLeaeNkaL 45 k rr+++NReAA++sR+RKka ++++Le+ +L++ ++L CCG009675.1 194 AKTLRRLAQNREAAKKSRLRKKAraYVQQLETSRIKLTQLEQDL 237 6889*****************96337899998777777666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.3E-4	184	240	No hit	No description
SMART	SM00338	0.0051	191	270	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	1.5E-4	193	238	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	198	213	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.1E-31	278	353	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MASHRIGETG LSDSGPSNQH LPYALLHGIN TPSTSFINQE GSAFDFGELE EAIVLQGVKI 60 RNDEARAPLF TVTGRPAATL EMFPSWPMRF QETPRVGSSK SGGESTDSGS ALNTLSSKAE 120 AHLEPESPIS KKVASSDHYN QAFYQKHLQF QEQQQVDMAN DTSRTGGPSQ QNQSPAKSTQ 180 EKRKGSTSEK QLDAKTLRRL AQNREAAKKS RLRKKARAYV QQLETSRIKL TQLEQDLQRA 240 RQQGLFLGGC GGAGGNISSG AAIFDMEYAR WLEDDHRHMS ELRTGLQAHL SDGDLRVIVD 300 GYISHYDEIF RLKVVAAKSD VFHLITGMWS TPAERCFLWM GGFRPSELIK MLISQLDPLT 360 EQQVMGIYSL QQSSQQAEEA LSQGLEQLQQ SLVDTIAGGP VIGGMQQMVV ALGKLANLEG 420 FVRQADNLRQ QTLHQLRRIL TVRQAARCFL VIGEYYGRLR ALSSLWASRP RETMISEDNS 480 CQTTTDLQMV QPAQNHFSNF

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MASHRIGETG LSDSGPSNQH LPYALLHGIN TPSTSFINQE GSAFDFGELE EAIVLQGVKI  60
RNDEARAPLF TVTGRPAATL EMFPSWPMRF QETPRVGSSK SGGESTDSGS ALNTLSSKAE  120
AHLEPESPIS KKVASSDHYN QAFYQKHLQF QEQQQVDMAN DTSRTGGPSQ QNQSPAKSTQ  180
EKRKGSTSEK QLDAKTLRRL AQNREAAKKS RLRKKARAYV QQLETSRIKL TQLEQDLQRA  240
RQQGLFLGGC GGAGGNISSG AAIFDMEYAR WLEDDHRHMS ELRTGLQAHL SDGDLRVIVD  300
GYISHYDEIF RLKVVAAKSD VFHLITGMWS TPAERCFLWM GGFRPSELIK MLISQLDPLT  360
EQQVMGIYSL QQSSQQAEEA LSQGLEQLQQ SLVDTIAGGP VIGGMQQMVV ALGKLANLEG  420
FVRQADNLRQ QTLHQLRRIL TVRQAARCFL VIGEYYGRLR ALSSLWASRP RETMISEDNS  480
CQTTTDLQMV QPAQNHFSNF

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011000920.1	0.0	PREDICTED: transcription factor TGA2-like isoform X1
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A2K1Z8W2	0.0	A0A2K1Z8W2_POPTR; Uncharacterized protein
STRING	POPTR_0009s16590.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4555	33	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]