PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG009483.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 285aa    MW: 30704.6 Da    PI: 5.6285
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG009483.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.25.9e-161483146
                     TSSS-HHHHHHHHHHHHHTTTT.........................-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.........................tWktIartmgkgRtlkqcksrwqk 46
                     rg+W++eEd  l+ + + +G+g                          W++Ia+ ++ gRt++++k++w++
      CCG009483.1 14 RGPWSPEEDATLKSYLETHGTGgnwialpqkagnapivhafllcsvaKWSLIAAQLP-GRTDNDVKNYWNT 83
                     89*******************************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.8E-23594IPR009057Homeodomain-like
PROSITE profilePS5129416.471989IPR017930Myb domain
SMARTSM007175.8E-141387IPR001005SANT/Myb domain
PfamPF002498.3E-141483IPR001005SANT/Myb domain
SuperFamilySSF466892.48E-101486IPR009057Homeodomain-like
CDDcd001671.84E-101685No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDATLKSYLE THGTGGNWIA LPQKAGNAPI VHAFLLCSVA  60
KWSLIAAQLP GRTDNDVKNY WNTKLKKKIL AGKISLTIKN NPINAPAKVA NIHAIPCSTS  120
PILYVPKAET ESSVTFSDHY SLTQISGTLP ALSDTGYEPI INSTSQNLSP NQFQFSSFPG  180
VIDMSEFSMN SIHIVSPSQE GSTISDSSSL AMDSKGLSVP STNGGLEDVG ILMDSEPGFP  240
SDFFNGLLLQ DKSSEVATNC YQYFADFGYV DIKPQGLNRG VTNQY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347392e-37KM034739.1 Jatropha curcas clone JcMYB120 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011015974.10.0PREDICTED: transcription factor RAX2-like
RefseqXP_011019548.10.0PREDICTED: transcription factor RAX2-like
TrEMBLB9HE031e-170B9HE03_POPTR; Uncharacterized protein
STRINGPOPTR_0006s25060.11e-171(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.16e-40myb domain protein 84