PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG009457.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 399aa    MW: 45547 Da    PI: 4.7351
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG009457.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM608e-19161491128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdi...ykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                  +p G+rFhP d+elv +yL kk+++ + +++ +v ++++ +   +  ePw++  +  k + ++++fF++  kk ++  rk      g+W++  k+ + 
  CCG009457.1  16 MPHGYRFHPDDQELVRFYLYKKITDPDlFTAINVpVRDCPLfgdHAREPWQIWdSFPKRHGEDLFFFTHLTKKGKNFVRKIC-RGPGTWHQECKHPPF 112
                  699**********************99634434457777551115679****734445567789999999998776554443.468********9988 PP

          NAM  93 lsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   ++   + ++  +kk ++++  + ++ ++ +W+m ey+l
  CCG009457.1 113 NVSidhTCQVAAIKKQFTYH--NPKSDQNGSWFMFEYSL 149
                  887665667799********..45555699*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-2111164IPR003441NAC domain
PROSITE profilePS5100523.14316164IPR003441NAC domain
PfamPF023651.2E-1517149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MAMSILQNPE TITPQMPHGY RFHPDDQELV RFYLYKKITD PDLFTAINVP VRDCPLFGDH  60
AREPWQIWDS FPKRHGEDLF FFTHLTKKGK NFVRKICRGP GTWHQECKHP PFNVSIDHTC  120
QVAAIKKQFT YHNPKSDQNG SWFMFEYSLP SLSEQTVLCQ LKRKEVQASE KVQTTTTTTK  180
KRKRYADGLY DATNTMFQKP RVEEEAQKQR IMGFNGAAKI ISQVENQQLH LELEPVHDNG  240
VQPDIFESFY CEPLAVLEND LMDADSGITS TCTAAPPTVF TLDPAENLQP SDVDWDAAAT  300
EYDVFHPEIF GLLDLSGYCD EEDGVPATRE TAEASAYWVQ ATPTIDPSFT ADAIDYYLER  360
GVSDSSLTNC SGSFLQMQTG PIQENEILIS NPFHMERYR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161183KRKEVQASEKVQTTTTTTKKRKR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2843760.0GU284376.1 Populus balsamifera isolate GAL12 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2843770.0GU284377.1 Populus balsamifera isolate GAL12 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2843780.0GU284378.1 Populus balsamifera isolate GIL14 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2843790.0GU284379.1 Populus balsamifera isolate GIL14 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2843800.0GU284380.1 Populus balsamifera isolate HAY07 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2843810.0GU284381.1 Populus balsamifera isolate HAY07 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2843820.0GU284382.1 Populus balsamifera isolate LOV02 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2843830.0GU284383.1 Populus balsamifera isolate LOV02 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2843840.0GU284384.1 Populus balsamifera isolate MGR10 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2843850.0GU284385.1 Populus balsamifera isolate MGR10 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2843860.0GU284386.1 Populus balsamifera isolate NWL07 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2843870.0GU284387.1 Populus balsamifera isolate NWL07 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2843880.0GU284388.1 Populus balsamifera isolate POR11 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2843890.0GU284389.1 Populus balsamifera isolate POR11 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2843900.0GU284390.1 Populus balsamifera isolate STL13 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2843910.0GU284391.1 Populus balsamifera isolate STL13 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2843920.0GU284392.1 Populus balsamifera isolate STO11 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2843930.0GU284393.1 Populus balsamifera isolate STO11 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2843940.0GU284394.1 Populus balsamifera isolate WHR03 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2843950.0GU284395.1 Populus balsamifera isolate WHR03 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010999305.11e-149PREDICTED: NAC transcription factor 29-like
TrEMBLB9HDP70.0B9HDP7_POPTR; Uncharacterized protein
STRINGPOPTR_0006s24740.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13633523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.12e-11NAC-domain protein 101