PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG009429.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

LBD

Protein Properties

Length: 328aa MW: 37733.4 Da PI: 7.8536

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG009429.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.3	3e-39	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCaaCk +rrkC++dC++apyfpae++++f++vhklFG +n+++ll++lp e+r+da+ s+vyeA+ar+rdPv G+++++++l q+l+ lkael+l++ CCG009429.1 5 ACAACKNQRRKCNEDCFVAPYFPAEKTRDFEAVHKLFGLHNIVNLLQNLPLEKRSDAVISMVYEANARVRDPVTGCTRILSELMQRLNALKAELNLVQ 102 7***********************************************************************************************99 PP DUF260 99 ee 100 ++ CCG009429.1 103 NK 104 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.594	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.0E-38	5	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MKRPACAACK NQRRKCNEDC FVAPYFPAEK TRDFEAVHKL FGLHNIVNLL QNLPLEKRSD 60 AVISMVYEAN ARVRDPVTGC TRILSELMQR LNALKAELNL VQNKNAYYRT LKQQQPGQQN 120 MVHNAGFVDF LREKNNVKLL PSPNQDLNFL HENLENPQQL QESSSAQNQI SYYHTLKQKQ 180 LGQQNMVHNA GFVDFLQEHN NASLLPSPNQ DFTLHENLEN PQQLQDSSSD QNQIAHYRAL 240 KQHQPGKQNM VHNAGFVDFL QENDNVKLLP SSSQDFNYLH ENLENPQQLQ ESSSVARRLI 300 SGIDFKIKSR DDCCTFKIPT TQRFNYPG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-25	6	108	12	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-25	6	108	12	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011019799.1	0.0	PREDICTED: LOB domain-containing protein 12-like
TrEMBL	A0A3N7F5N5	0.0	A0A3N7F5N5_POPTR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF23129	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	8e-31	LOB domain-containing protein 4