PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

CCG009372.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB

Protein Properties

Length: 273aa MW: 30606.5 Da PI: 7.9044

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG009372.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.1	1.5e-16	11	64	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48 rg WT+ Ed++l+ +v+ +G g+W++++++ g ++R++k+c++rw++yl CCG009372.1 11 RGTWTATEDKILAAYVRNYGEGNWARVPKETGklnftsLKRCGKSCRLRWLNYL 64 89**************************************************97 PP
2	Myb_DNA-binding	51	3.3e-16	70	114	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ CCG009372.1 70 RGNISPDEEDLIIRLHKLLGNR-WALIAGRLP-GRTDNEIKNYWNST 114 7899****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.914	6	64	IPR017930	Myb domain
SuperFamily	SSF46689	8.03E-28	9	111	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-12	10	66	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-15	11	64	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.1E-21	12	71	IPR009057	Homeodomain-like
CDD	cd00167	6.86E-10	13	64	No hit	No description
PROSITE profile	PS51294	25.856	65	119	IPR017930	Myb domain
SMART	SM00717	3.2E-16	69	117	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-14	70	114	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.5E-25	72	119	IPR009057	Homeodomain-like
CDD	cd00167	1.14E-11	74	115	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MGRSPKGGII RGTWTATEDK ILAAYVRNYG EGNWARVPKE TGKLNFTSLK RCGKSCRLRW 60 LNYLKPDVKR GNISPDEEDL IIRLHKLLGN RWALIAGRLP GRTDNEIKNY WNSTLKRKVQ 120 ANDQKQPRRG NKDTKKQTRK TSTGLSKAAP STNSSLPSPP VLAENKETDQ ILTASSIEEG 180 TLEKYLIENP NSNDELLLFT NDNDVPCNFL MDLDMGQMSF SDFLQTDIFS DGNNMLVNGP 240 APSYPDEASS FPEAMLKNWT CEDGFELDLA MGP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-28	9	119	5	108	B-MYB
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ588548	0.0	FJ588548.1 Populus tremuloides MYB transcription factor R2R3-like protein (MYB183) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011019359.1	0.0	PREDICTED: transcription factor WER-like
TrEMBL	B9HD14	0.0	B9HD14_POPTR; MYB family protein
STRING	POPTR_0006s23810.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31	34	817

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	2e-52	MYB family protein