PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG009369.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 137aa    MW: 15960.9 Da    PI: 5.7373
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG009369.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.8e-171055148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+ + +E++l+v+++k+lG++ W++Ia +++ gRt++++k++w+++l
      CCG009369.1 10 RGNISDQEEDLIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 55
                     78999*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.31E-15162IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-24160IPR009057Homeodomain-like
PROSITE profilePS5129425.766559IPR017930Myb domain
SMARTSM007172.2E-15957IPR001005SANT/Myb domain
PfamPF002496.9E-151055IPR001005SANT/Myb domain
CDDcd001678.53E-111455No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MNHLRPNIKR GNISDQEEDL IVRLHKLLGN RWSLIAGRLP GRTDNEIKNY WNSHLSKKIK  60
QNEKPVRSST WQEPVKTKVL DMDNVAKRSE EGTSKTLEDS KFSFGGDGFF DFSNEDPMNL  120
EWMSEFLELD ETLYGFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-1525951108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011019353.12e-97PREDICTED: transcription factor WER-like
SwissprotQ388502e-29MYB5_ARATH; Transcription repressor MYB5
TrEMBLB9HD121e-93B9HD12_POPTR; MYB family protein
STRINGPOPTR_0006s23780.12e-94(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21483288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-31myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]