PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG009265.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 345aa    MW: 37413.8 Da    PI: 6.7659
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG009265.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000452112491255
                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  CCG009265.1 211 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 249
                  6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.585199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.50E-6209253No hitNo description
SuperFamilySSF474594.45E-10209260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-7213255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MNRGVLQSSP VQQMMAGNPN WWSINNMRPP ITHHQQPSPF LPPPSLFPQF LPSSISSSSS  60
SLPLPYDNPD QLPESWSQLL LGGLLCDEDK SNINNFQAKK MENWEEQVLH QASSASVVDV  120
KQENSASNYV YGANEDFQAK PTACSKVIPA SSPKSCVTSF SSNMLDFSTS KGDGRHPPPD  180
RSSDCNSTAT GGAVKKARVQ SSSAQPTFKV RKEKLGDRIT ALHQLVSPFG KTDTASVLLE  240
AIGYIRFLQS QIEALSLPYL GSGSRNMRQQ QSVQGESNCI FPEDPGQLLD DSCINRKGAS  300
QQDSHAEPKD LRSRGLCLVP VSCTLPVGSD NGADYWAPAL GGGFR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1463810.0EF146381.1 Populus trichocarpa clone WS0117_M02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048370.10.0PREDICTED: transcription factor bHLH68
RefseqXP_011048371.10.0PREDICTED: transcription factor bHLH68
SwissprotQ8S3D11e-103BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A1L6K5S60.0A0A1L6K5S6_POPTO; Uncharacterized protein
TrEMBLB9ILQ20.0B9ILQ2_POPTR; BHLH family protein
STRINGPOPTR_0018s09060.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.16e-92bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]