PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG009220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 207aa MW: 22392.6 Da PI: 8.3079 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59 | 1.1e-18 | 117 | 166 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp g+ r +lg+f+ ae+Aa+a+++ +++g CCG009220.1 117 KYRGVRQRP-WGKWAAEIRDP---GQGSRLWLGTFDNAEDAARAYDKKNIEFRG 166 8********.**********8...435*******************98777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.63 | 117 | 174 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.2E-36 | 117 | 180 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.77E-22 | 117 | 175 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.56E-31 | 117 | 174 | No hit | No description |
Pfam | PF00847 | 1.1E-11 | 117 | 165 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.9E-31 | 117 | 175 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-11 | 118 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-11 | 140 | 156 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MDASSSNNLV QRRVDEHNAI VSALKHVISG GIDHGSTTGP IEYQNQQQIL AADDGNVGGG 60 SSIIYVSDSE TCPVCKLSTS QCLGCVYFSS GTTDQEGGGG NEGTTKKTGK GKGRKNKYRG 120 VRQRPWGKWA AEIRDPGQGS RLWLGTFDNA EDAARAYDKK NIEFRGIRAI TNFPRSDYQV 180 REMEQDKPNK TGKAKNDVGE TSQVGDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-22 | 118 | 174 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216469 | 0.0 | AC216469.1 Populus trichocarpa clone POP036-C22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011043562.1 | 1e-153 | PREDICTED: ethylene-responsive transcription factor ERF109-like | ||||
TrEMBL | B9HHG6 | 1e-128 | B9HHG6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s11080.1 | 1e-129 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2962 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28370.1 | 2e-24 | ERF domain protein 11 |