PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG009208.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 264aa    MW: 29419 Da    PI: 9.4173
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG009208.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.2e-08172212954
                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  CCG009208.1 172 ARHRRERISERMRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 212
                  699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.402163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-14164222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.45E-12165217No hitNo description
SuperFamilySSF474592.49E-14167221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-5173212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDVDMMKSSS GEEHIDMMTM MMQMAKLPDF CSEPFHNTTN TSTILQEIQF SNGNPTSIVA  60
SPPIYHDNPH ASSPPFINPP PCSMPFMGTP IQEPMTPPLQ HNMMANKFKY STPFSSANSF  120
LSSIEKKNST AAIRDMTFYV AAMQPIHIDP ESVKPPKRRN VKISKDPQSV AARHRRERIS  180
ERMRILQRLV PGGTKMDTAS MLDEAIHYVK FLKKQVQSLQ QAGANTPTGG FGFTGVTMLN  240
VGYSSLVKNC QPAANMVDTM QMLR
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043535.10.0PREDICTED: transcription factor HEC2-like
SwissprotQ9SND41e-44HEC2_ARATH; Transcription factor HEC2
TrEMBLB9HHC01e-152B9HHC0_POPTR; Uncharacterized protein
STRINGPOPTR_0005s18210.11e-142(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.13e-44bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]