PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG009191.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | LBD | ||||||||
Protein Properties | Length: 194aa MW: 20839.6 Da PI: 8.7245 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135 | 2.8e-42 | 18 | 118 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++p+++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael++++ CCG009191.1 18 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPQNQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLEAELNAVR 115 7***********************************************************************************************99 PP DUF260 99 eel 101 +e+ CCG009191.1 116 NEI 118 875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.671 | 17 | 118 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.8E-42 | 18 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MGRRHMLGPP GTLNTITPCA ACKLLRRRCA QECPFSPYFS PHEPQKFASV HKVFGASNVS 60 KMLMEVPQNQ RADAANSLVY EANVRLRDPV YGCMGAISAL QQQVQSLEAE LNAVRNEILK 120 YRYREANIIH SSHVALLSSG AVSIAAPSPA PSTPPPPTAS PPPSSSSSLM YTQPTSSAAA 180 DYSTTSTENV SFFG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-46 | 10 | 129 | 3 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-46 | 10 | 129 | 3 | 122 | LOB family transfactor Ramosa2.1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011010866.1 | 1e-141 | PREDICTED: LOB domain-containing protein 15-like | ||||
Refseq | XP_011014548.1 | 1e-141 | PREDICTED: LOB domain-containing protein 15-like | ||||
Swissprot | Q8L5T5 | 8e-75 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A2K1Y2W3 | 1e-139 | A0A2K1Y2W3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s08040.1 | 1e-140 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2298 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 2e-73 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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