PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG009054.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

DBB

Protein Properties

Length: 297aa MW: 31859.6 Da PI: 5.734

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG009054.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.3	1.2e-06	4	47	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e++ C ++ lC+ C ++ H H++vpl CCG009054.1 4 QCNVCEAAEANVLCCADEAALCRACDETVHAAnklaskHQRVPL 47 7****99*******************66899999999986 PP
2	zf-B_box	26.8	1.1e-08	53	90	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..H 37 + +kC+ ++e +fC +++ llC +C +++H H CCG009054.1 53 QIPKCDICQEAAGFFFCLEDRALLCGKCDVAIHTAntH 90 5689****99999****************55553 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.978	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	3.25E-7	3	47	No hit	No description
SMART	SM00336	2.7E-9	4	47	IPR000315	B-box-type zinc finger
SMART	SM00336	4.5E-13	52	99	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.574	52	99	IPR000315	B-box-type zinc finger
Pfam	PF00643	2.4E-6	54	90	IPR000315	B-box-type zinc finger
CDD	cd00021	1.91E-7	55	99	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MKIQCNVCEA AEANVLCCAD EAALCRACDE TVHAANKLAS KHQRVPLSTS SPQIPKCDIC 60 QEAAGFFFCL EDRALLCGKC DVAIHTANTH VSAHQRFLLT GVKVGLESTD PSASSSPGKS 120 PSGEKTTLEM KSCPVSRRGT SMPLASPSNQ VFPANVCGVG EFGPAKLPYS GDSAAFSISQ 180 WQIDEFLELA EFNQHYGYMD NGSSKADSGK HGDSDSSAIL RSAEQEVDDE ECLGQVPDSS 240 WAVPQIPSPP TASGLYWPKS IHHSDTAIFV PDICGSAVQT HRHCQQRGTV SKWRQQL

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269\|PubMed:18182030, ECO:0000269\|PubMed:18540109, ECO:0000269\|PubMed:18796637, ECO:0000269\|PubMed:21070414, ECO:0000269\|PubMed:21427283}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:18182030}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011045527.1	0.0	PREDICTED: B-box zinc finger protein 22-like
Swissprot	Q9SYM2	3e-96	BBX22_ARATH; B-box zinc finger protein 22
TrEMBL	U5GSS0	0.0	U5GSS0_POPTR; Uncharacterized protein
STRING	POPTR_0001s39260.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4566	34	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	3e-93	light-regulated zinc finger protein 1