PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG008947.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 528aa    MW: 58045.8 Da    PI: 6.7856
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG008947.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-1761105147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT eE++++++a k++G g W++I +++g ++t+ q++s+ qky
      CCG008947.1  61 REKWTDEEHQRFLEALKLYGRG-WRRIQEHVG-TKTAVQIRSHAQKY 105
                      789*******************.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.72E-1755109IPR009057Homeodomain-like
PROSITE profilePS5129421.85956110IPR017930Myb domain
TIGRFAMsTIGR015571.4E-1659108IPR006447Myb domain, plants
SMARTSM007171.5E-1360108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-1061107IPR009057Homeodomain-like
PfamPF002491.2E-1561105IPR001005SANT/Myb domain
CDDcd001672.60E-1163106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MAAASKEQIE GTNLNSFGKA CDFSTNGCEQ SETDIRLQEL YSFGSDNVPK VRKPYTITKQ  60
REKWTDEEHQ RFLEALKLYG RGWRRIQEHV GTKTAVQIRS HAQKYFSKVV RYSGGSNESS  120
LKPIEIPPPR PKRKPAHPYP RKPVNVLEGT GASSQLERSP SPNSSVSEKE NQSPTSVLSA  180
MASDTFGSAL AEPCNACSSP TSCTTDMHSI SLSPSAKETE HGTSNSSGEE KGNLSLVQMS  240
LSLLENFLSE VKKFELGSKN TVCAEHVAAE KASSASIKLF GMTVKIVDSQ KESPPGAEIV  300
LPVISNENHD NVNADKEKPA HTLQRKQSDT ELSLGMANSN QNLWPSPASV FQCTELQGDN  360
ANYFATNSSI PWWAYSQVVP LMYLTSYEHT SAQKPIPCVE ERFEEKENLN ERSCTSSNVF  420
SVVDLENGER NLGVVDSQYG QPSVEGRSSF QKSTRGTFLQ FHVAIVSEVE LSGVLLEALR  480
GANKSLSECD LQDEHGSVPR TFISGEKGTA KRKVLPFSST AKRKMLPY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1484100.0EF148410.1 Populus trichocarpa x Populus deltoides clone WS01314_I10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000774.10.0PREDICTED: protein REVEILLE 7-like
TrEMBLA0A1L6K4Z80.0A0A1L6K4Z8_POPTO; EARLY-PHYTOCHROME-RESPONSIVE1 family protein
TrEMBLB9I4X50.0B9I4X5_POPTR; Uncharacterized protein
STRINGPOPTR_0012s03530.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73133244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.14e-45MYB_related family protein