PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG008816.2

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

SRS

Protein Properties

Length: 818aa MW: 90836.4 Da PI: 8.6474

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG008816.2	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	181.2	4.4e-56	534	691	6	154
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelets 103 +C+dCGn+akk+C+++RCRtCCksr++dC+th+kstWv+aa+rrer s+a++ kr+re+ + ++s++ st+ ++a ++ +++t CCG008816.2 534 RACRDCGNRAKKECQYRRCRTCCKSREYDCTTHMKSTWVSAARRRERLGCGGGGDSSASSGGGCVGGKRPRENAT-ATSNSFSTSNNNAAASVNFDTG 630 58*******************************************9999999998888888888899998733.3333333333444445555555 PP DUF702 104 s..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 s lP +v+ +avfrcvrv++++ ge+e+aYq+ v+i+GhvfkGiLydqG++e CCG008816.2 631 SsyqdasfklsLPGQVREPAVFRCVRVTAINSGEAEVAYQAKVNISGHVFKGILYDQGIDE 691 57788888889*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.7E-53	534	690	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.8E-23	536	577	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	5.3E-25	642	689	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 818 aa Download sequence Send to blast
MAAIAAILSS IPSSSSSSKF SKYQSHPSAP PPCRVVCRGG SQPPPPGTTD FQFALHDALD 60 SSGINTTHAR EARQNFMSQI KRLSSIEREI SISINRRVDL AKTALFIAAE DDSLISHSSV 120 ALPVDAFIER LDDLSMGFCT NNSSALKSSP EMLLDSLEKF LYVKKVLTHR SGSAVMLALI 180 YSEILKTLRL WSLLDFDCEI FFPHDNHGLP RGYHKQKSKD SDHQHILTSL TLLEKILRNL 240 KEAFWPFQHD HTKSLFLRAA HAADCVDISK TFEGSGAELA SAKAAQHRLD RGVWTSVHFG 300 DMRRALSVWL GGCTLSLICW KKILVLALAG WAACERLILL ESDPKELRDY SVLLYHCGFY 360 EQSLQYLKLY QEKGSPLQKQ ASNKLSSLEE DAVEKLMIRL NLISMEEGWS KPSHEQGIFR 420 VSLLIILPDH PETQAIGSRC RVFQLMLLFL RPGIHEGMFS AQQSNLGRTS VLMEPPHIPS 480 THQIANTNDQ CNIANNQESW TTLNKYQQKS SFFKRGDLNV VGDNDTGRNI GPARACRDCG 540 NRAKKECQYR RCRTCCKSRE YDCTTHMKST WVSAARRRER LGCGGGGDSS ASSGGGCVGG 600 KRPRENATAT SNSFSTSNNN AAASVNFDTG SSYQDASFKL SLPGQVREPA VFRCVRVTAI 660 NSGEAEVAYQ AKVNISGHVF KGILYDQGID EKNLFPCVSK MQSGERTRDS TSPIVEPSVA 720 YAATGNHRLL EGPLLHNQAR VIVAMSPSSW ESICLFRIVK SQRAFKRYHE DFGFCPKINQ 780 FKLGSFSLPP TDAGWCGLRL IARCCSGVRR AERAEWND

Sequence ? help Back to Top

Protein Sequence Length: 818 aa Download sequence Send to blast

MAAIAAILSS IPSSSSSSKF SKYQSHPSAP PPCRVVCRGG SQPPPPGTTD FQFALHDALD  60
SSGINTTHAR EARQNFMSQI KRLSSIEREI SISINRRVDL AKTALFIAAE DDSLISHSSV  120
ALPVDAFIER LDDLSMGFCT NNSSALKSSP EMLLDSLEKF LYVKKVLTHR SGSAVMLALI  180
YSEILKTLRL WSLLDFDCEI FFPHDNHGLP RGYHKQKSKD SDHQHILTSL TLLEKILRNL  240
KEAFWPFQHD HTKSLFLRAA HAADCVDISK TFEGSGAELA SAKAAQHRLD RGVWTSVHFG  300
DMRRALSVWL GGCTLSLICW KKILVLALAG WAACERLILL ESDPKELRDY SVLLYHCGFY  360
EQSLQYLKLY QEKGSPLQKQ ASNKLSSLEE DAVEKLMIRL NLISMEEGWS KPSHEQGIFR  420
VSLLIILPDH PETQAIGSRC RVFQLMLLFL RPGIHEGMFS AQQSNLGRTS VLMEPPHIPS  480
THQIANTNDQ CNIANNQESW TTLNKYQQKS SFFKRGDLNV VGDNDTGRNI GPARACRDCG  540
NRAKKECQYR RCRTCCKSRE YDCTTHMKST WVSAARRRER LGCGGGGDSS ASSGGGCVGG  600
KRPRENATAT SNSFSTSNNN AAASVNFDTG SSYQDASFKL SLPGQVREPA VFRCVRVTAI  660
NSGEAEVAYQ AKVNISGHVF KGILYDQGID EKNLFPCVSK MQSGERTRDS TSPIVEPSVA  720
YAATGNHRLL EGPLLHNQAR VIVAMSPSSW ESICLFRIVK SQRAFKRYHE DFGFCPKINQ  780
FKLGSFSLPP TDAGWCGLRL IARCCSGVRR AERAEWND

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU226715	1e-111	CU226715.1 Populus EST from severe drought-stressed leaves.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011000567.1	0.0	PREDICTED: uncharacterized protein LOC105108101 isoform X2
TrEMBL	A0A2K2BRF5	0.0	A0A2K2BRF5_POPTR; Uncharacterized protein
STRING	POPTR_0001s06490.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	2e-45	Lateral root primordium (LRP) protein-related