PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG008739.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Trihelix | ||||||||
Protein Properties | Length: 738aa MW: 83252.6 Da PI: 9.3152 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 93.7 | 1.8e-29 | 61 | 145 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ +r++ lk+plWeevs+k++e g++rs+k+Ckek+en+ k++k++keg+ ++++++s +++fd+lea CCG008739.1 61 RWPRQETLALLKIRSDMDAVFRDSGLKGPLWEEVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKEGRTGKSEGKS--YKFFDELEA 145 8********************************************************************9877776..******985 PP | |||||||
2 | trihelix | 95.5 | 5.1e-30 | 408 | 493 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r +++ +++++ +k+plWe++s+ m++ g++rs+k+ +ekwen+nk++kk+ke++kkr +e+s+tcpyfdql+a CCG008739.1 408 RWPKVEVQALINLRANLDIKYQENGAKGPLWEDISAGMQRLGYNRSAKRGNEKWENINKYFKKVKESNKKR-PEDSKTCPYFDQLDA 493 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.178 | 54 | 118 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.023 | 58 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 3.1E-20 | 60 | 145 | No hit | No description |
CDD | cd12203 | 6.24E-24 | 60 | 125 | No hit | No description |
SMART | SM00717 | 13 | 405 | 467 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 1.7E-19 | 407 | 494 | No hit | No description |
CDD | cd12203 | 3.98E-23 | 407 | 472 | No hit | No description |
PROSITE profile | PS50090 | 5.633 | 407 | 465 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 738 aa Download sequence Send to blast |
MIGDSSVQAT SSDVAATATR VVTEGGAGGG GGGGFGSNSA EEDKNMGAYH EGNRMNYGAN 60 RWPRQETLAL LKIRSDMDAV FRDSGLKGPL WEEVSRKLAE LGYHRSAKKC KEKFENVYKY 120 HKRTKEGRTG KSEGKSYKFF DELEAFQNHP SHSTQPPTLT TPPPPPPKAQ TASATITTLP 180 WTNNTAIASH TTVPSRTNPM DIMSQTIATP PNNHTISPMP ISSNPINPSQ NAYPSSLQNL 240 TTHLLASSSP SSTASDEELE VSYKKRKRES NWKDFFERLT RDVIKKQEDL QEKFLEKIEK 300 YEHERMAREE AWRTQETARI NREHETLIQE RSTAAAKDAA VVAFLQKISG QQNSVQTQEI 360 PQPTTTPTAS PPQPLQLRPA PASLAPVTKS EVPKRDNGDN FTVSSSSRWP KVEVQALINL 420 RANLDIKYQE NGAKGPLWED ISAGMQRLGY NRSAKRGNEK WENINKYFKK VKESNKKRPE 480 DSKTCPYFDQ LDALYKEKNK MEITVNSDYA AKPTSTMEPL MYRYIVLPRG KILALEMPAT 540 YMYIDALKTP TKTIRMKSSN FPKRKPHSHP LKFKASTFSN ESTFMWSNLA FVSDDDNGKC 600 SITGSNISSG PSGCPTENRR EYFSKNVTEE EMRIREELAR EIERELEREI MEGILLLVRR 660 LSILKAKQIN RGLEYLNLDQ YLSEICTSCN LCNADGDHVS RWHSRLQSPA SEISHAADDF 720 ARERLYKKVF GDGIINQW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN315782 | 0.0 | JN315782.1 Populus tomentosa SANT DNA-binding domain-containing protein (GT2) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011042851.1 | 0.0 | PREDICTED: trihelix transcription factor GT-2-like | ||||
Swissprot | Q39117 | 1e-140 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | B9GTJ1 | 0.0 | B9GTJ1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s06900.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF373 | 34 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76890.2 | 1e-122 | Trihelix family protein |