PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG008652.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 328aa    MW: 37929.5 Da    PI: 9.1201
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG008652.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.71.5e-06185233255
                  HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +  h++ Er RR+r ++++  L +llP++     +K +K +i  +A + I++L+
  CCG008652.2 185 CYRHKMSERLRRQRERNGYLALHSLLPHD-----TKKDKNSIMLMAARKIQELE 233
                  5679************************9.....8999999*******999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.85E-10180246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.80E-7181233No hitNo description
PROSITE profilePS5088811.623183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-7187253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0043189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MENMQKHQHD APVSTKISFL DCIDLSTPDI QQSFSLTNRF YLRDEKHRRY IPVLDPDNQL  60
HGILPGLRRT TVEVSSTIIF KETVIYSSWK LKFELPRKGQ GRGLEMDHFF QQQLLQGDVF  120
CYENGPVNQS AFVPYICRPW GGSEVGAGSS SMGVHPTNMN RRMIEFMRRS FTVEIETQEP  180
DSKRCYRHKM SERLRRQRER NGYLALHSLL PHDTKKDKNS IMLMAARKIQ ELEMYKEMLK  240
RRNDEIEDRL AASGIKNVES TKIRIKVANP TSGVDPMIDV LKCLKSLGTK TRSIQSQFSD  300
QELVAVMEIE SEIEAAEMEN AVKRTLAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182195KRCYRHKMSERLRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024462136.11e-157transcription factor bHLH92
RefseqXP_024462137.11e-157transcription factor bHLH92
RefseqXP_024462138.11e-157transcription factor bHLH92
RefseqXP_024462139.11e-157transcription factor bHLH92
RefseqXP_024462140.11e-157transcription factor bHLH92
TrEMBLA0A2K1ZI810.0A0A2K1ZI81_POPTR; Uncharacterized protein
STRINGPOPTR_0008s16170.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125722734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.15e-34bHLH family protein