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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG008617.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 148aa MW: 16969.8 Da PI: 9.0395 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.1 | 6.1e-20 | 19 | 70 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdps +g r +lg+f+taeeAa+a+++a+ +l+ + CCG008617.1 19 RYRGVRRRP-WGKFAAEIRDPSRQG--GRLWLGTFDTAEEAARAYDKAAFNLRRH 70 6********.**********96543..9***********************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.3E-14 | 19 | 70 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.9E-31 | 19 | 78 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.381 | 19 | 77 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.05E-27 | 19 | 77 | No hit | No description |
SuperFamily | SSF54171 | 1.18E-22 | 19 | 78 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.6E-32 | 19 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-11 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-11 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MEEPNKGKGH EEKGRGEVRY RGVRRRPWGK FAAEIRDPSR QGGRLWLGTF DTAEEAARAY 60 DKAAFNLRRH LAILNFPSDY ISQVTEFSAR PRSFSASSSN VGTTQSFERG CSSSTGQGKQ 120 VFEFEYLDDK ILEELLESEE EKKKRRQD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-31 | 1 | 131 | 1 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 145 | KKKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011029835.1 | 1e-105 | PREDICTED: ethylene-responsive transcription factor ERF098-like | ||||
Swissprot | Q9LTC5 | 7e-49 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | U5G5Z8 | 2e-85 | U5G5Z8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s16600.1 | 3e-86 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF270 | 33 | 215 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 2e-21 | ERF family protein |
Publications ? help Back to Top | |||
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