PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG008563.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 262aa    MW: 30329.4 Da    PI: 9.6062
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG008563.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding612.6e-192269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll+++v+++G g+W+++ar  g++R +k+c++rw +yl
      CCG008563.1 22 KGPWTAEEDRLLIEYVRLHGDGRWSSVARLAGLKRNGKSCRLRWVNYL 69
                     79********************************************97 PP
2Myb_DNA-binding53.17.3e-1775119147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++
      CCG008563.1  75 RGQITPHEESIIVELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 119
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.9521773IPR017930Myb domain
SuperFamilySSF466893.55E-3019116IPR009057Homeodomain-like
SMARTSM007176.6E-172171IPR001005SANT/Myb domain
PfamPF002497.7E-182269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-242376IPR009057Homeodomain-like
CDDcd001672.55E-122469No hitNo description
PROSITE profilePS5129419.44474124IPR017930Myb domain
SMARTSM007171.5E-1474122IPR001005SANT/Myb domain
PfamPF002499.2E-1475119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-2477123IPR009057Homeodomain-like
CDDcd001674.74E-1079120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MSWGVMAGQL AWGGLIEEGW RKGPWTAEED RLLIEYVRLH GDGRWSSVAR LAGLKRNGKS  60
CRLRWVNYLR PDLKRGQITP HEESIIVELH ARWGNRWSTI ARSLPGRTDN EIKNYWRTHF  120
KKKAKLSPDN SDKARTRLLK RQQFQQQQQL RRQQQQTQHQ QPLQINQLDM RKIVSMLDEK  180
EDKAPCTPQM GQEMAPHAIY SYTTEEHGLL YNMFNVNASV PEASNEDILW DGLWNLDDLH  240
GNLGAACATN KASMQNLVAP FC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-28912414128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029723.10.0PREDICTED: myb-related protein 305-like
TrEMBLB9HKW31e-163B9HKW3_POPTR; Uncharacterized protein
STRINGPOPTR_0008s17350.11e-164(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.15e-86myb domain protein 305