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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG008563.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 262aa MW: 30329.4 Da PI: 9.6062 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61 | 2.6e-19 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++v+++G g+W+++ar g++R +k+c++rw +yl CCG008563.1 22 KGPWTAEEDRLLIEYVRLHGDGRWSSVARLAGLKRNGKSCRLRWVNYL 69 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.1 | 7.3e-17 | 75 | 119 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++ CCG008563.1 75 RGQITPHEESIIVELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 119 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.952 | 17 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.55E-30 | 19 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-17 | 21 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.7E-18 | 22 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-24 | 23 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.55E-12 | 24 | 69 | No hit | No description |
PROSITE profile | PS51294 | 19.444 | 74 | 124 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-14 | 74 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.2E-14 | 75 | 119 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-24 | 77 | 123 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.74E-10 | 79 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MSWGVMAGQL AWGGLIEEGW RKGPWTAEED RLLIEYVRLH GDGRWSSVAR LAGLKRNGKS 60 CRLRWVNYLR PDLKRGQITP HEESIIVELH ARWGNRWSTI ARSLPGRTDN EIKNYWRTHF 120 KKKAKLSPDN SDKARTRLLK RQQFQQQQQL RRQQQQTQHQ QPLQINQLDM RKIVSMLDEK 180 EDKAPCTPQM GQEMAPHAIY SYTTEEHGLL YNMFNVNASV PEASNEDILW DGLWNLDDLH 240 GNLGAACATN KASMQNLVAP FC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-28 | 9 | 124 | 14 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011029723.1 | 0.0 | PREDICTED: myb-related protein 305-like | ||||
TrEMBL | B9HKW3 | 1e-163 | B9HKW3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s17350.1 | 1e-164 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 5e-86 | myb domain protein 305 |