PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG008498.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 248aa MW: 28252.8 Da PI: 6.5064 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.5 | 7.5e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W+ eEd++l + + G ++W+ +++ g+ R++k+c++rw +yl CCG008498.1 14 RGTWSVEEDQKLMNFILSNGIKCWRHVPKLAGLLRCGKSCRLRWMNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.3 | 6.3e-17 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++ E++ lv+++ +lG++ W++Ia+ ++ gRt++++k++w++ CCG008498.1 67 RGAFSEAEEDHLVELHSRLGNR-WSKIAAFFP-GRTDNEIKNHWNT 110 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.926 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.38E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-12 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.73E-7 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.01 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-15 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.62E-10 | 69 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MGRRPCCDKV GLKRGTWSVE EDQKLMNFIL SNGIKCWRHV PKLAGLLRCG KSCRLRWMNY 60 LRPDLKRGAF SEAEEDHLVE LHSRLGNRWS KIAAFFPGRT DNEIKNHWNT RIKKKLKPLG 120 LDPQGHEPPV EQAETNCDAK ESTFAAMKEV VGNINVDQNL LENPVSKVET RLDHDHPCSA 180 HNTSKALRED SDAGWSTFPS LTDLQSDSCL SRSMDEYVLQ ESSSESYWID AYVDSLLSWD 240 GLSFSNLE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011029614.1 | 0.0 | PREDICTED: protein ODORANT1-like isoform X2 | ||||
Swissprot | P81394 | 8e-68 | MYB15_ANTMA; Myb-related protein 315 | ||||
TrEMBL | A0A2K1ZJ86 | 1e-179 | A0A2K1ZJ86_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s18110.1 | 1e-105 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF28123 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14340.1 | 5e-78 | myb domain protein 40 |
Publications ? help Back to Top | |||
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