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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | CCG008436.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family | bHLH | ||||||||
| Protein Properties | Length: 264aa MW: 30039.9 Da PI: 6.4019 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 49.6 | 7.2e-16 | 71 | 123 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
++ +hn+ Er RR++iNs ++ Lr+llP a + kKls ++ +++eYI +Lq
CCG008436.1 71 KKLNHNASERDRRKKINSLYSSLRSLLPAA--DRRKKLSIPCTVSRVIEYIPQLQ 123
6789*************************6..49999*****************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 14.424 | 70 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 4.4E-13 | 71 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 1.83E-6 | 71 | 127 | No hit | No description |
| Gene3D | G3DSA:4.10.280.10 | 1.3E-14 | 71 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 2.36E-16 | 71 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 2.7E-10 | 76 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 264 aa Download sequence Send to blast |
MFEELYPISL FSTFGWPLEE TISHEQHCSF RDGETPESFT HFPPSQPDVR QLDRSTSFTA 60 HSGSGDPSMV KKLNHNASER DRRKKINSLY SSLRSLLPAA DRRKKLSIPC TVSRVIEYIP 120 QLQQEVERLI QMKEELLSKL SRQADDLTHQ ENQRKGTMYS SLSSVSASRL SDREVAVQIS 180 TNKLPRSPLS EILVNLEEAG LLLINSSFFE SLGGRVFYNL HLQAMEGTYT VECEALNERL 240 VSLCEKRESL FPLNSSSPYS NCIF |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 82 | 104 | RKKINSLYSSLRSLLPAADRRKK |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011000433.1 | 0.0 | PREDICTED: transcription factor ORG2-like | ||||
| TrEMBL | B9IHR7 | 1e-157 | B9IHR7_POPTR; Uncharacterized protein | ||||
| STRING | POPTR_0016s03680.1 | 1e-157 | (Populus trichocarpa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF2402 | 33 | 79 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G56970.1 | 7e-55 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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