PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG008415.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 240aa    MW: 27105.9 Da    PI: 8.724
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG008415.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.5e-1170116354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++h+e+E+rRR+riNs +++Lr ll  +      K +Ka+ L k+v+ +++L
  CCG008415.1  70 KNHKEAEKRRRERINSHLDKLRGLLHCN-----SKTDKASLLAKVVQRVREL 116
                  58***********************997.....7************998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.26567116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-870116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-970119No hitNo description
Gene3DG3DSA:4.10.280.101.9E-1271124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-1371127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-973122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MQPENCSENS QLYRFLAENG MINVGAYGFP AAMQTLCTSS ATSYHNNNYH FESSVITDMT  60
AQDRALAALK NHKEAEKRRR ERINSHLDKL RGLLHCNSKT DKASLLAKVV QRVRELKQQT  120
SELSGLETFP SETDEVTVLS GEYSSDGQLI FKASLCCEDR LDLMPDLNEI LKSLHLKTLK  180
AEMVTLGGRI RNVLIIAADK DHSVESVHFL QNALKSLLER SNSSEKSKRR RILNRKLVIQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227231KRRRI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1448040.0EF144804.1 Populus trichocarpa clone WS01118_H20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000409.11e-178PREDICTED: transcription factor bHLH106-like
SwissprotO806742e-83BH106_ARATH; Transcription factor bHLH106
TrEMBLA9P9G71e-169A9P9G7_POPTR; BHLH family protein
STRINGPOPTR_0016s03460.11e-170(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.12e-79bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]