 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
CCG008295.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
MYB |
| Protein Properties |
Length: 327aa MW: 36217.8 Da PI: 7.4623 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| CCG008295.1 | genome | LZU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 59.1 | 9.6e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg WT+eEd +l +++q+G+++W++I++ g+ R++k+c++rw +yl
CCG008295.1 14 RGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL 61
89********************************************97 PP
|
| 2 | Myb_DNA-binding | 44.1 | 4.8e-14 | 68 | 110 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g ++ E+ +v+++ G++ W++Ia+ ++ gRt++++k++w++
CCG008295.1 68 GQFSDAEEHTIVKLHSVVGNR-WSLIAAQLP-GRTDNDVKNHWNT 110
7899*****************.*********.***********97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 327 aa
Download sequence Send
to blast |
MGRIPCCEKD NVKRGQWTPE EDNKLSSYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY 60
LRPDLKHGQF SDAEEHTIVK LHSVVGNRWS LIAAQLPGRT DNDVKNHWNT KLKRKLSGMG 120
IDPVTHKPFS HLMAEIATTL ATPQVANLAE AALGCFKDEM LHLLTKKRID FQLLQCNTNG 180
VQGNASSPYI ATKHDENNDT IERITLCFSR AMQEPGILPP NKTWDSTGAT SANFAGTCAY 240
LPSSVNAFLC GPSSFGNEVA LSPWSQSMCT GSTCTAGDQQ GRLHEKLDHE NGEESQGGKE 300
IRNGSSFFNT DCVLWDLPSD DLMNSIV
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Essential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}. |
