PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG008222.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 617aa MW: 67606.6 Da PI: 9.4417

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG008222.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.2e-05	84	106	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H CCG008222.1 84 FICEVCNKGFQREQNLQLHRRGH 106 89*******************88 PP
2	zf-C2H2	12.4	0.00047	160	182	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ CCG008222.1 160 WKCEKCSKKYAVQSDWKAHSKTC 182 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.89E-7	83	106	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.9E-6	83	106	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	3.1E-5	84	106	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.0052	84	106	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.99	84	106	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	86	106	IPR007087	Zinc finger, C2H2
SMART	SM00355	170	125	155	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	4.8E-5	148	181	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.89E-7	155	180	No hit	No description
SMART	SM00355	140	160	180	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 617 aa Download sequence Send to blast
MAASSSSAPF FGIREEEQNQ QMKQQHSSTP TSSSAQAPPP QKKKRNQPGT PSKYHQFYLK 60 IDLPNPDAEV IALSPMTLMA TNRFICEVCN KGFQREQNLQ LHRRGHNLPW KLKQKTTKEV 120 RRKVYLCPEL TCVHHEPSRA LGDLTGIKKH YSRKHGEKKW KCEKCSKKYA VQSDWKAHSK 180 TCGTREYRCD CGTLFSRRDS FITHRAFCDA LAQESARNPP TNLNTIGSHL YGSSNMTLGL 240 SQVGTQISSL QDHNNQSTDV LRLGGGGART GQFDHLLPSS IGSSSFRPPQ QMPSPAFFMQ 300 ETNQNYHDEN QSQQDLLQNK PFHHGLMQFA DIHNTTGNPP SAGNLFNLSF LSNSSTASSI 360 SNSNNANNSN SNLPTSGLLM PSHFNNQNGV GGGEGSNVFS NNVMGNQMTS GVPSLYSSSV 420 QNDNMASHMS ATALLQKAAQ MGSSSSNNSA SLLRSFGRDR PLVGGNFSGM FSENENNLHD 480 LMNSFAPGNS SMFGPGHAQE NPYGGYTASR TNLEQEKQHH GPNFGNSNMD EAKLHQSLNA 540 SIGGSDRLTR DFLGVGPQIV RSMSGSSGFS QREKQQQPQR QHHGMDMGGS SLDSERHNAN 600 ISAAPTSQSF GGNRSFQ

Sequence ? help Back to Top

Protein Sequence Length: 617 aa Download sequence Send to blast

MAASSSSAPF FGIREEEQNQ QMKQQHSSTP TSSSAQAPPP QKKKRNQPGT PSKYHQFYLK  60
IDLPNPDAEV IALSPMTLMA TNRFICEVCN KGFQREQNLQ LHRRGHNLPW KLKQKTTKEV  120
RRKVYLCPEL TCVHHEPSRA LGDLTGIKKH YSRKHGEKKW KCEKCSKKYA VQSDWKAHSK  180
TCGTREYRCD CGTLFSRRDS FITHRAFCDA LAQESARNPP TNLNTIGSHL YGSSNMTLGL  240
SQVGTQISSL QDHNNQSTDV LRLGGGGART GQFDHLLPSS IGSSSFRPPQ QMPSPAFFMQ  300
ETNQNYHDEN QSQQDLLQNK PFHHGLMQFA DIHNTTGNPP SAGNLFNLSF LSNSSTASSI  360
SNSNNANNSN SNLPTSGLLM PSHFNNQNGV GGGEGSNVFS NNVMGNQMTS GVPSLYSSSV  420
QNDNMASHMS ATALLQKAAQ MGSSSSNNSA SLLRSFGRDR PLVGGNFSGM FSENENNLHD  480
LMNSFAPGNS SMFGPGHAQE NPYGGYTASR TNLEQEKQHH GPNFGNSNMD EAKLHQSLNA  540
SIGGSDRLTR DFLGVGPQIV RSMSGSSGFS QREKQQQPQR QHHGMDMGGS SLDSERHNAN  600
ISAAPTSQSF GGNRSFQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	9e-35	156	217	3	64	Zinc finger protein JACKDAW
5b3h_F	9e-35	156	217	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:22898356, ECO:0000269\|PubMed:24821766}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00255	DAP	Transfer from AT2G02070	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC208494	0.0	AC208494.1 Populus trichocarpa clone JGIACSB265-L05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011014313.1	0.0	PREDICTED: zinc finger protein NUTCRACKER-like
Refseq	XP_011014314.1	0.0	PREDICTED: zinc finger protein NUTCRACKER-like
Refseq	XP_011014315.1	0.0	PREDICTED: zinc finger protein NUTCRACKER-like
Swissprot	Q9ZUL3	1e-148	IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBL	U5G1I0	0.0	U5G1I0_POPTR; Uncharacterized protein
STRING	POPTR_0010s10950.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1536	33	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-124	indeterminate(ID)-domain 5

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]