PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG008211.3
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 693aa    MW: 76423.7 Da    PI: 8.3855
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG008211.3genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.29.1e-09578626348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v ++G g+W+ I r        Rt  ++k++w+++l
      CCG008211.3 578 AWTLSEVMKLVEGVSRYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 626
                      7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.225571630IPR017930Myb domain
SuperFamilySSF466894.19E-16573636IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-13573632IPR009057Homeodomain-like
SMARTSM007172.9E-9575628IPR001005SANT/Myb domain
CDDcd116602.81E-19577627No hitNo description
PfamPF002498.5E-7578626IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
METVVEVEGN DEAKLKECGI RNSTSSLSSP KQISDPVVYK LVRLEGDGRI VPATDDELME  60
VESLLIDDKC EMHIVADPGQ TVGCISNEGS SSGIAQLESL EGLLQSRNKE ADPDKLNARL  120
EVNSKSTCDN PCICVRFIDS QCCDQHDKLL HIDAKLQCEI PLQETAPSLA PSLSESHFNQ  180
SGSFGECSHS SDKLVAGGST LSVVTSKPDF SKLKGEICLD NLSIKELHET FKATFGRETT  240
VKDKQWLKRR ISMGLTNSCD VSVTSFIIKD NKLVKKGNEE ISNCMDGSYA EDLPIGNQKD  300
LPTSLVSQLD YHQVVPEKRL ENPNLDENSG SDDHQTEQRA AKRVRKPTKR YIEELSEVES  360
KESNGRLMNL AKNPGHGLIS LKSRVGLVRN VPLGGRTVVT RLDSLGGYGI QVPCVSRVRR  420
SRPRKNFMAL LKFNPSGMGM EATLAKKVLG DHSFPTDDGK ESRVLKASST PEHVHHQKFN  480
PSGMGMEATL VKKVLGDHSF PTDDGKESRV LKASSTPKHF HHQFIGVPEK DKQFSVMSAI  540
GLGHNTELKC INSSRDSDDN VVTVPTPKGG IRRKHHRAWT LSEVMKLVEG VSRYGAGRWS  600
EIKRLAFASY SYRTSVDLKD KWRNLLKASF AQTPQDNGMN SRKSTGAMPI PAPILLKVRE  660
LAEMQSQVLP NLSSTKIAGS TRKNVHEKRT GFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1418424RRSRPRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0292441e-110CT029244.1 Poplar cDNA sequences.
GenBankCT0295441e-110CT029544.1 Poplar cDNA sequences.
GenBankCT0295451e-110CT029545.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011040062.10.0PREDICTED: uncharacterized protein LOC105136426 isoform X2
RefseqXP_011040063.10.0PREDICTED: uncharacterized protein LOC105136426 isoform X2
TrEMBLA0A2K2B2H60.0A0A2K2B2H6_POPTR; Uncharacterized protein
STRINGPOPTR_0003s06240.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78493040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-122TRF-like 6