PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG008109.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 401aa MW: 44314.2 Da PI: 4.8892 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53 | 7.8e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEde+l+++++ G g+W++ ++ g+ R++k+c++rw +yl CCG008109.1 14 KGRWTAEEDEKLAKYIQANGEGSWRSMPKNAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 55.3 | 1.6e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +teE+e++v+++ lG++ W++Ia++++ gRt++++k++w+++l CCG008109.1 67 RGNISTEEEEIIVQLHSSLGNR-WSLIASYLP-GRTDNEIKNYWNSHL 112 7899******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.9E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.556 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.05E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.31E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.288 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.10E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MGRAPCCEKV GLKKGRWTAE EDEKLAKYIQ ANGEGSWRSM PKNAGLLRCG KSCRLRWINY 60 LRADLKRGNI STEEEEIIVQ LHSSLGNRWS LIASYLPGRT DNEIKNYWNS HLSRRIHSFR 120 RSASESLPLI TETANEGVLT KGKGGRADTF AVKKNKNSHT PKDVTRASTK KPLMENNTSN 180 CHNSNIEVMQ LLQTPAIEKE TLSSAINDTV IWDPCEDDKE QMDLVMPSPY PETGRGMVGS 240 SGEQATLVAS QSDEITSGNS MLCPIVGEIH NDSSGPYYQG LDTALCFDEV TDKELLDPNG 300 GSTLNAKRQD GLVVHSGERE NGVLSPNRTV YDSIGYLSSN GESGEWHSCS SISRSGFDDW 360 IWDDVMGGHV EGGGDEIQED NMLYWLWESD KVEGGGRDTG L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 7e-25 | 12 | 116 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 7e-25 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 7e-25 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 7e-25 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00627 | PBM | Transfer from PK06182.1 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011042225.1 | 0.0 | PREDICTED: myb-related protein 330-like | ||||
TrEMBL | B9GSG5 | 0.0 | B9GSG5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s19920.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 4e-72 | myb domain protein 111 |