PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG008020.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 639aa MW: 70342.7 Da PI: 4.6958

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG008020.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170	7.3e-53	10	141	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 lp GfrF+Ptdeel+++yL+ k++g++ e+ evi+e+d++k ePwdLp + +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd++++s+ CCG008020.1 10 LPLGFRFRPTDEELISHYLRLKINGRDSEV-EVIPEIDVCKREPWDLPglSVIKTDDPEWFFFCPRDRKYPNGHRSNRATNAGYWKATGKDRTIKSRk 106 699**********************999.99***********6447888899**********************************97 PP NAM 96 ...kgelvglkktLvfykgrapkgektdWvmheyr 127 +++l+g+kktLvfy+grapkge+t+W+mheyr CCG008020.1 107 sagNTTLIGMKKTLVFYRGRAPKGERTNWIMHEYR 141 7766677*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.63E-60	4	165	IPR003441	NAC domain
PROSITE profile	PS51005	56.74	10	165	IPR003441	NAC domain
Pfam	PF02365	1.1E-27	11	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 639 aa Download sequence Send to blast
MVAMVSIDSL PLGFRFRPTD EELISHYLRL KINGRDSEVE VIPEIDVCKR EPWDLPGLSV 60 IKTDDPEWFF FCPRDRKYPN GHRSNRATNA GYWKATGKDR TIKSRKSAGN TTLIGMKKTL 120 VFYRGRAPKG ERTNWIMHEY RPTEKDLDGT GPGQVAFVLF RLFRKPEERT NGVKYDEIEQ 180 IGYSPAAAKS PPDNAPSDLV QETATSDMHS GKQSEDIKMW LPESDNGTTN SVVRVDSCIN 240 RHGTSVIEDL VPEATAVEAC PLLDESSLIH EPVSGELDHE VFSPVPSHIP ADLGCYIDSP 300 YASDFGNDQN EFPFQDVSIE QDVSITELLD GFFNNHDKCS GEETSKNNLG VGSETRLCGQ 360 IPPGNFYAPD NGIYSFMNNL QHVSLMGVPA WPSDQFCSNE LFQMQPAPGA LRAPTPVFYG 420 ELGRGNIGHF GNNFVGQDAP SATSAISSFG VLNSIEEATS QMTSVDNGSG VSGTGIKIRA 480 RQPRVRPQSD IFIAQGSGPR RILLQLQTKL LSESVGYCKV KDAGYIKDED EVQSAVTEAT 540 GDAEKQTPTA DYLQKESPLP SSKTSWEIAE ESSSDLRLRA KKEGESESSQ IASTAFPAAP 600 PVYISIFLLL ITIVAFAGIW RSLMTVKFLW IQDGASDNL

Sequence ? help Back to Top

Protein Sequence Length: 639 aa Download sequence Send to blast

MVAMVSIDSL PLGFRFRPTD EELISHYLRL KINGRDSEVE VIPEIDVCKR EPWDLPGLSV  60
IKTDDPEWFF FCPRDRKYPN GHRSNRATNA GYWKATGKDR TIKSRKSAGN TTLIGMKKTL  120
VFYRGRAPKG ERTNWIMHEY RPTEKDLDGT GPGQVAFVLF RLFRKPEERT NGVKYDEIEQ  180
IGYSPAAAKS PPDNAPSDLV QETATSDMHS GKQSEDIKMW LPESDNGTTN SVVRVDSCIN  240
RHGTSVIEDL VPEATAVEAC PLLDESSLIH EPVSGELDHE VFSPVPSHIP ADLGCYIDSP  300
YASDFGNDQN EFPFQDVSIE QDVSITELLD GFFNNHDKCS GEETSKNNLG VGSETRLCGQ  360
IPPGNFYAPD NGIYSFMNNL QHVSLMGVPA WPSDQFCSNE LFQMQPAPGA LRAPTPVFYG  420
ELGRGNIGHF GNNFVGQDAP SATSAISSFG VLNSIEEATS QMTSVDNGSG VSGTGIKIRA  480
RQPRVRPQSD IFIAQGSGPR RILLQLQTKL LSESVGYCKV KDAGYIKDED EVQSAVTEAT  540
GDAEKQTPTA DYLQKESPLP SSKTSWEIAE ESSSDLRLRA KKEGESESSQ IASTAFPAAP  600
PVYISIFLLL ITIVAFAGIW RSLMTVKFLW IQDGASDNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-42	9	165	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-42	9	165	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-42	9	165	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-42	9	165	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-42	9	165	19	168	NAC domain-containing protein 19
3swm_B	2e-42	9	165	19	168	NAC domain-containing protein 19
3swm_C	2e-42	9	165	19	168	NAC domain-containing protein 19
3swm_D	2e-42	9	165	19	168	NAC domain-containing protein 19
3swp_A	2e-42	9	165	19	168	NAC domain-containing protein 19
3swp_B	2e-42	9	165	19	168	NAC domain-containing protein 19
3swp_C	2e-42	9	165	19	168	NAC domain-containing protein 19
3swp_D	2e-42	9	165	19	168	NAC domain-containing protein 19
4dul_A	1e-42	9	165	16	165	NAC domain-containing protein 19
4dul_B	1e-42	9	165	16	165	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC149298	0.0	AC149298.1 Populus trichocarpa clone Pop1-021H24, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011038026.1	0.0	PREDICTED: uncharacterized protein LOC105135051
TrEMBL	A0A2K2CDK4	0.0	A0A2K2CDK4_POPTR; Uncharacterized protein
STRING	POPTR_0001s45700.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13625	18	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33060.1	1e-138	NAC 014